Pairwise Alignments

Query, 171 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 63.2 bits (152), Expect = 2e-15
 Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 3/156 (1%)

Query: 6   QLVLLNYLGRHYASLKQRLTRKLGNADDAGDALHDTWLR-LKGNEDHGTVQNPGAYLSRM 64
           +L L +    H + L+  L R+LGNA DA D   DT+LR L   +    +Q P AYL  +
Sbjct: 12  ELTLSSLYRDHRSWLESWLRRRLGNAWDAADLSQDTFLRVLASAQPIAQMQEPRAYLVTV 71

Query: 65  AVNIAVDVQRRQSRLLSGDEVEELLEEIEDPAPGPARTAEIRSDLDAVLTLLDRMPERRR 124
              + V+  +R+S  L    +  L    E   P P +   +   L A+  LLD +P   R
Sbjct: 72  GKRLLVNFHQRRS--LEQAYLNALASLPEACVPSPEQRWLLLETLQALDELLDGLPVLVR 129

Query: 125 AVALLVHAEGLTQNEAAQRLGVSLRTVEYELKRVHE 160
              L    EGL   + A+RL VS RTV+  + + +E
Sbjct: 130 RAFLWSQLEGLGYRDIAERLDVSERTVKRYMAQAYE 165