Pairwise Alignments

Query, 171 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 61.2 bits (147), Expect = 9e-15
 Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 16  HYASLKQRLTRKLGNADDAGDALHDTWLRLKGNEDHGTVQNPGAYLSRMAVNIAVDVQRR 75
           H+  L   L R+LG    A D   DT++RL    +   +  P A+L+ +A  +  +  RR
Sbjct: 22  HHNWLTGWLRRRLGCPHSAADLAQDTYMRLLQAREAPQLVEPRAFLATVAKRVLCNHFRR 81

Query: 76  QSRLLSGDEVEELLEEIEDPAPGPARTAEIRSDLDAVLTLLDRMPERRRAVALLVHAEGL 135
           Q   L    ++ L +  E+ AP   + A I   L A+  LLD +P   +   LL   +GL
Sbjct: 82  QE--LERAYLQALAQVPEEVAPCEEQKAIIFETLLALDHLLDGLPPLVKRAFLLAQVDGL 139

Query: 136 TQNEAAQRLGVSLRTVEYELKRVHER 161
            Q E A+ LG+SL TV+  L +   R
Sbjct: 140 GQGEIARELGISLATVKRYLNKAAMR 165