Pairwise Alignments

Query, 171 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 58.5 bits (140), Expect = 5e-14
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 13/143 (9%)

Query: 16  HYASLKQRLTRKLGNADDAGDALHDTWLRLKGNEDHGTVQNPGAYLSRMAVNIAVDVQRR 75
           +Y  L   L+ +LG+   A D  HD +LR+        +++P A+L R A+N+ VD  RR
Sbjct: 4   YYRELVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRR 63

Query: 76  QSRLLSGDEVEELLEEIEDPAPGPARTAEIRSD--LDAVLTL----LDRMPERRRAVALL 129
           Q  L+   E  + L+     A     ++E++ D  LD  L L    LD +    R   LL
Sbjct: 64  Q--LVRQAEPLDALD-----ADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLL 116

Query: 130 VHAEGLTQNEAAQRLGVSLRTVE 152
              EGL+  + A+RLG+S   VE
Sbjct: 117 RKIEGLSHQQIAERLGISRSLVE 139