Pairwise Alignments

Query, 171 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

 Score = 57.8 bits (138), Expect = 9e-14
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 16  HYASLKQRLTRKLGNADDAGDALHDTWLRLKGN-EDHGTVQNPGAYLSRMAVNIAVDVQR 74
           H   L+  L R++GNA DA D   DT+LR+  + +    ++ P AYL  +   +  +  +
Sbjct: 19  HRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLTVGKRLLSNFHQ 78

Query: 75  RQSRLLSGDEVEELLEEIEDPAPGPARTAEIRSDLDAVLTLLDRMPERRRAVALLVHAEG 134
           R+S  L    ++ L +  E   P P +   +   L A+  LLD +    R   L    EG
Sbjct: 79  RRS--LEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIRKAFLWSQLEG 136

Query: 135 LTQNEAAQRLGVSLRTVEYELKRVHE 160
           L   E  QRLGV  R+V+  + + +E
Sbjct: 137 LGYAEIGQRLGVCQRSVKRYMAQAYE 162