Pairwise Alignments

Query, 171 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 78.2 bits (191), Expect = 2e-19
 Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 1/140 (0%)

Query: 9   LLNYLGRHYASLKQRLTRKLGNADDAGDALHDTWLRLKGNEDHGT-VQNPGAYLSRMAVN 67
           LL     HY  L Q LTR++ +   A D   +T+L+L   ++    V +  +++ R+A N
Sbjct: 9   LLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGN 68

Query: 68  IAVDVQRRQSRLLSGDEVEELLEEIEDPAPGPARTAEIRSDLDAVLTLLDRMPERRRAVA 127
           +A+D  RR+ R+ +  +  +   E+  PAP P      R  L  +   L ++P+  R   
Sbjct: 69  LAIDALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQAL 128

Query: 128 LLVHAEGLTQNEAAQRLGVS 147
           LL   EGLTQ + AQRLGVS
Sbjct: 129 LLNRVEGLTQKQVAQRLGVS 148