Pairwise Alignments

Query, 171 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 63.5 bits (153), Expect = 2e-15
 Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 3/143 (2%)

Query: 19  SLKQRLTRKLGNADDAGDALHDTWLRLKGNEDHGTVQNPGAYLSRMAVNIAVD---VQRR 75
           +L + L R +GN   A D L +T+LR+        +++   ++ + A N+A+D    +R 
Sbjct: 16  TLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARNLALDHLRARRV 75

Query: 76  QSRLLSGDEVEELLEEIEDPAPGPARTAEIRSDLDAVLTLLDRMPERRRAVALLVHAEGL 135
           Q+R+L  D  +E+L  +  PA      A     L  +   L+++ ER++ + +L    G 
Sbjct: 76  QARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFILSRLHGA 135

Query: 136 TQNEAAQRLGVSLRTVEYELKRV 158
           T  E A++L VS  TV+ ELK +
Sbjct: 136 TYLEIAEQLSVSPSTVQKELKLI 158