Pairwise Alignments

Query, 171 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 60.1 bits (144), Expect = 2e-14
 Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 2/142 (1%)

Query: 16  HYASLKQRLTRKLGNADDAGDALHDTWLRLKGNEDHGTVQNPGAYLSRMAVNIAVDVQRR 75
           H+  L+  L  ++G ++ A D   DT++RL        ++ P AYLS +A  + +D  RR
Sbjct: 19  HHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYLSSIARGLMIDQFRR 78

Query: 76  QSRLLSGDEVEELLEEIEDPAPGPARTAEIRSDLDAVLTLLDRMPERRRAVALLVHAEGL 135
             R L     E L    E   P       I   L+ +   L ++  R R   LL   +GL
Sbjct: 79  --RALERAYQEGLAHLPEAEVPSEEDKLVILDSLERLDRALQQLKPRVRQAFLLAQLDGL 136

Query: 136 TQNEAAQRLGVSLRTVEYELKR 157
           +  + AQRLGVS  TVE +L +
Sbjct: 137 SIVQVAQRLGVSRATVERDLAK 158