Pairwise Alignments

Query, 171 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 178 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 72.0 bits (175), Expect = 5e-18
 Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 9/140 (6%)

Query: 16  HYASLKQRLTRKLGNADDAGDALHDTWLRLKGN----EDHGTVQNPGAYLSRMAVNIAVD 71
           H+  ++Q L RKLGNA DA +   D ++RL        DH   ++  AYL RM+ N  VD
Sbjct: 21  HHGWIRQWLQRKLGNAHDAAELAQDVFVRLLSKPRVFNDH---EHARAYLGRMSRNACVD 77

Query: 72  VQRRQSRLLSGDEVEELLEEIEDPAPGPARTAEIRSDLDAVLTLLDRMPERRRAVALLVH 131
             RR  R +    +E L  + E  AP     A I   L+ +  + +RMP+R      +  
Sbjct: 78  FWRR--RRVEQAYLEVLAAQPEQLAPSLEHQAVILETLEQLQAMFERMPQRVAEAFSMAQ 135

Query: 132 AEGLTQNEAAQRLGVSLRTV 151
            +G+ Q E A++LGVS R+V
Sbjct: 136 LQGMKQREIAEQLGVSERSV 155