Pairwise Alignments

Query, 518 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  136 bits (342), Expect = 2e-36
 Identities = 148/531 (27%), Positives = 223/531 (41%), Gaps = 71/531 (13%)

Query: 2   KHLHGA---------TLIAVLLTGATATAAFAATRIVVALPA--DIRSSMPGTNRDDNTD 50
           +H+H A          L+A+LL GAT  AA        A P   DI         D + +
Sbjct: 7   QHMHRAFMKSRPLRLALVALLLGGATQLAAKPLVVCTEASPEGFDIVQYTTAVTADASAE 66

Query: 51  SVILNVVEGLVGYGEGGDVKPLLARSVETSADGLTYTFRLRSDVRFHNGD------KLSS 104
           +V   +V+   G  E   ++P LA   + SADGLTYTF LR  V+FH  D       L++
Sbjct: 67  TVFNRLVDFKPGTTE---IQPALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNA 123

Query: 105 ADVLWSWNRYMDPKTEWRCLAE-----FDGRNDLKVLK-VEAPDASTVVMRINRRSALFL 158
            DVLWS NR +DP   W          F+     ++LK V   D  TVV+ ++R  A FL
Sbjct: 124 DDVLWSLNRQLDPNHPWHDKTSVGYPYFESMGFKELLKSVSKADEHTVVITLSRPEAPFL 183

Query: 159 DTLARTDCGMTGILSK-------ASVKADGTWDRPIGTGPFEFSDWKRGRGITLSRFAGY 211
             +A    G T I S         S K      +PIGTGPF F  + +   +        
Sbjct: 184 RDMA---MGFTSIYSAEYGDQLLKSGKTAELNSKPIGTGPFIFQRYNKDAQVRFK----- 235

Query: 212 KSPEGSKPDGYVGLKTPGVDVVQLQVIPDPATVKLGMASKSVDIAQLLSSDVVEVKNDPA 271
                  PD + G K P   +V    I     ++   A++          DV  +K DP 
Sbjct: 236 -----PNPDYFRG-KPPADALVFAIAIDSNVRLQKLRANECQVALYPKPDDVPSIKQDPK 289

Query: 272 LVTSAESDSSKHALLFQTRDPLMADAKFRRAVAAALDYKQLVDVASDGLSKPNNSAV--- 328
           L            +   T+   + D + R+A+  A D +  V    D L    N+ V   
Sbjct: 290 LKVEEIEALVTGYIAMNTQHKYLNDVRVRKAINMAFDRQTHV----DQLFGKGNALVGVN 345

Query: 329 -FERSVYADATQRKGFKTDLTQAKALLKESSY-RGQTIKLIANK----RSPMPSFQVALV 382
            +  ++    T  +    DL +A+ALL ++    G  I L         +P P     ++
Sbjct: 346 PYPPTMIGYNTHNQNPPRDLDKARALLSQAGVPEGTVITLFTRNGGGPTNPNPRLSAEML 405

Query: 383 TQAMLQAIGIKVEIEVLEWATQLDRYNAGNYQMMSFSYSGR-------LDPALSYEQFTG 435
            QA L+ IG+K++I V+EWA  L R   G   ++S  ++G        L P LS +    
Sbjct: 406 -QADLKQIGLKLDIRVMEWAEMLRRAKNGEADLVSTGWAGDNGDPDNFLSPLLSCDAV-- 462

Query: 436 DKARQARKVWDNPEAIALIETARTVSDKAERQKIFDRLHEMALADVPLINL 486
            K+ +    W NP+   LI  AR V D  ER ++++   ++   + P I++
Sbjct: 463 -KSGENYARWCNPKFQELISRAREVIDNDERARLYNEALKVYDDEQPWISM 512