Pairwise Alignments

Query, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 336 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  224 bits (572), Expect = 2e-63
 Identities = 126/332 (37%), Positives = 189/332 (56%), Gaps = 21/332 (6%)

Query: 1   MLRFVVRRLLAAAPTLFISGAAVFFLIRLIPGDPAALLLGDQ-ADAASLADLHRRLGLDQ 59
           ML F+ RRL    PT F      F LIRLIPGDP  +++G++  D    A    RLGL++
Sbjct: 1   MLSFIARRLGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 60  GLPTQFSLWFQRMLHGDLGQSIRTGEPVLSLVIDHFVVSARIVFVAVALAAAIAVPAGML 119
            LP Q+  +  ++  GDLG+S+RT E V    +  F  +  + F A+  A  + + AG++
Sbjct: 61  PLPVQYLDYVGKLAQGDLGESLRTRESVWREFLTLFPATLELAFAALLFAGVVGLLAGVI 120

Query: 120 AAWRQNGKLDIGLVSAATVLLSIPSFWLGLMLLYLFGLELGWLPVIGYVDF--------- 170
           AA ++    D G++  +    S+P FW GL+L+  F + LGW PV G +D          
Sbjct: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTG 180

Query: 171 --------SEDPVA---ALTYMVLPVATLVLHETGILIRMARASTLEVLRLDYITYARSK 219
                   S++  A   A+ +++LP   L      ++ RM R+S LEVLR DYI  AR+K
Sbjct: 181 FMLIDTLLSDEEGAFKDAVMHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK 240

Query: 220 GLSEGAVLWRHAFRNAFGPTWTLIGLVLGNLLGGIAVVETVFTIPGLGRLLVDSIFGRDY 279
           GLS   V++ H  RNA  P  T+ GL +G LL G  + ET+F+ PG+G+ L+++I  RDY
Sbjct: 241 GLSPARVVFVHGLRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY 300

Query: 280 PVIQGCLLFVAFVYVLINLVVDLLYPLFDPRV 311
           PV+Q  +L +A + +L+N VVD+LY L +PR+
Sbjct: 301 PVVQNGILLIACLVILVNFVVDILYGLANPRI 332