Pairwise Alignments

Query, 313 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

 Score =  126 bits (317), Expect = 6e-34
 Identities = 83/296 (28%), Positives = 154/296 (52%), Gaps = 19/296 (6%)

Query: 3   LFLNLASQGLINGAVYALIAIGLAMVFGLLRILHIAHAGLFALGGYLGLVVTNATGSFAL 62
           +FL     GL  G+VY LIAIG  MV+G++ +++ AH  ++ +  YL  +       F +
Sbjct: 4   IFLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGI 63

Query: 63  G---------LAVSMAVVAACGVLMYRLCYEPILEQPPYVPLIASVGMFLAIEELLRLVF 113
                     L  ++ V    G ++ R+ Y+P+       PLI+++G+ L ++   ++  
Sbjct: 64  ESFPLLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQIAQ 123

Query: 114 GDHGLSYHVPPL-AGA--IDLGG--MRIKYAEIAVVVMACVLLGGLALFATRTRIGMAWR 168
           G       +P L AGA  +D+G   +++ Y ++ ++V A   +  L      T++G   R
Sbjct: 124 G--AKQQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGMALLTYVIKYTKLGRMCR 181

Query: 169 ATVSEPRMAASCGVSLRQVRHLNFAIGSAFAAAAGVMVGVLNNLVEPSMGAVPSYKALAI 228
           AT  + +MA+  G++  +V    F IG+A AA AGV++ +     +   G +   KA   
Sbjct: 182 ATQQDRKMASILGINTDRVISYVFVIGAAMAALAGVLITLNYGTFDFYAGFIIGIKAFTA 241

Query: 229 IVLGGLGNMGGTLVAALLLGLVEA-FGATYLSNYLDRDSIAFAAMLCVLLVRPEGL 283
            VLGG+G++ G ++  ++LG+ E+ F     S+Y  +D  +F+ ++ +L+ RP+GL
Sbjct: 242 AVLGGIGSLPGAMLGGIILGISESLFSGLINSDY--KDVFSFSLLVVILIFRPQGL 295