Pairwise Alignments

Query, 313 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  125 bits (315), Expect = 1e-33
 Identities = 84/296 (28%), Positives = 152/296 (51%), Gaps = 19/296 (6%)

Query: 3   LFLNLASQGLINGAVYALIAIGLAMVFGLLRILHIAHAGLFALGGYLGLVVTNATGSFAL 62
           +FL     GL  G+VY LIAIG  MV+G++ +++ AH  ++ +  YL  +       F +
Sbjct: 4   IFLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGV 63

Query: 63  G---------LAVSMAVVAACGVLMYRLCYEPILEQPPYVPLIASVGMFLAIEELLRLVF 113
                     L  ++ V    G  + R+ Y+P+       PLI+++G+ L ++   ++  
Sbjct: 64  ESFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQ 123

Query: 114 GDHGLSYHVPPLA-GAIDL----GGMRIKYAEIAVVVMACVLLGGLALFATRTRIGMAWR 168
           G       VP L  GA+ +    G +++ Y +I ++V A V +G L      T++G   R
Sbjct: 124 GAR--QQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCR 181

Query: 169 ATVSEPRMAASCGVSLRQVRHLNFAIGSAFAAAAGVMVGVLNNLVEPSMGAVPSYKALAI 228
           AT  + +MA+  G++  +V    F IG+  AA AGV++ +     +   G +   KA   
Sbjct: 182 ATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTA 241

Query: 229 IVLGGLGNMGGTLVAALLLGLVEA-FGATYLSNYLDRDSIAFAAMLCVLLVRPEGL 283
            VLGG+G++ G ++  ++LG+ E+ F     S+Y  +D  +F+ ++ +L+ RP+GL
Sbjct: 242 AVLGGIGSLPGAMLGGIILGISESLFSGLINSDY--KDVFSFSLLVMILIFRPQGL 295