Pairwise Alignments

Query, 313 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score =  145 bits (366), Expect = 1e-39
 Identities = 89/294 (30%), Positives = 150/294 (51%), Gaps = 14/294 (4%)

Query: 1   MSLFLNLASQGLINGAVYALIAIGLAMVFGLLRILHIAHAGLFALGGYLGLVVTNATGSF 60
           M  F+     GL  G++Y LIAIG  MV+G++ +++ AH  +F LGG+  L+V     SF
Sbjct: 1   MEYFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSF 60

Query: 61  ALGLAVSMAVVAACGVLMY----------RLCYEPILEQPPYVPLIASVGMFLAIEELLR 110
             G+ V++ ++    V M           R+ Y P+       PLI ++GM +A+   ++
Sbjct: 61  FAGIPVALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQ 120

Query: 111 LVFGDHGLSYHVPPLAG-AIDLGGMRIKYAEIAVVVMACVLLGGLALFATRTRIGMAWRA 169
           +  G       +P +   +   G + +   ++ ++V+  VLL        +T +G A RA
Sbjct: 121 VTQGPRNKP--IPSMVTESYHFGAITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQRA 178

Query: 170 TVSEPRMAASCGVSLRQVRHLNFAIGSAFAAAAGVMVGVLNNLVEPSMGAVPSYKALAII 229
           T  + +MAA  GV + +   + F +G+A AA AG M  +   +   S G VP  KA    
Sbjct: 179 TEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFTAA 238

Query: 230 VLGGLGNMGGTLVAALLLGLVEAFGATYLSNYLDRDSIAFAAMLCVLLVRPEGL 283
           VLGG+G++ G ++  LL+GL+E+  + Y S    +D  AF  +  VL+ +P G+
Sbjct: 239 VLGGIGSLPGAVLGGLLIGLIESLWSAYFS-IAYKDVAAFGILAFVLIFKPTGI 291