Pairwise Alignments

Query, 388 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 378 a.a., branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) from Pseudomonas putida KT2440

 Score =  138 bits (347), Expect = 3e-37
 Identities = 115/380 (30%), Positives = 187/380 (49%), Gaps = 19/380 (5%)

Query: 3   SNSFFKR--LALGLACAAGLAGFAGGAFAQGATTRIGFQAGLTGPAAADGNAGLAAARLA 60
           S +F+K+  LAL +A A G++ +        A  +IG    +TG  AA G   +  A+ A
Sbjct: 2   SQTFYKKGFLALAVATALGVSSYVQ------ADVKIGVAGPMTGANAAFGEQYMKGAQAA 55

Query: 61  VEQINGAGGVNGKKLELVVYDDQGKPEQAVPIANRMVG-DGVRAVVSAGFSGPSRAAAPV 119
            ++IN AGGVNG+K+ LV  DD  +P+QAV +ANR+V  D V  VV    S  +  A+ V
Sbjct: 56  ADKINAAGGVNGEKIVLVKGDDACEPKQAVAVANRLVDQDKVIGVVGHFCSSNTIPASEV 115

Query: 120 FQRAKIPYIAAIAFAPEITRTG-NYMFRVTSVGEVQGRAAAKLMGDVLHKKRAVLLTIKT 178
           +  A +  I   +  P++T  G + MFR+    + QG  A   + DVL  K+  +L  K 
Sbjct: 116 YDEAGVIAITPGSTNPQVTERGLSAMFRMCGRDDQQGIVAGDYIVDVLKGKKVAVLHDKD 175

Query: 179 DFGKTLAAGFKEAAPKFGVQLLKEYEYAPSDRQFGPLIASIKADNPDVIYATGFYFTAGP 238
            +G+ LA   K    K GV+ +        ++ F  ++  I++   DV+Y  G +  AGP
Sbjct: 176 TYGQGLADATKAQLEKRGVKPVLYEGLTRGEKDFSAVVTKIRSTGADVVYFGGLHPEAGP 235

Query: 239 LVAQLRSAGV-TADVVGAESLSSQQYIDIAG--QAAEGTVITNVIDWGSQLPEIADFLKA 295
           LV QLR  G+     +  + + + + +  AG  Q  +G  +T   D    LP+    ++ 
Sbjct: 236 LVRQLREQGLKDVKFMSDDGIVTDELVSTAGGAQYVDGVYMTFGAD-PRLLPDSKAVVEE 294

Query: 296 YEKATNSKAEAAATSTHAAVVALAAAIRKAKSDDPDKIRAALETLDVTTAIGRISFNKLH 355
           + KA  ++ E      +A++ ALAAA   AKS+  +     L+   V T +G     K  
Sbjct: 295 FRKA-GTEPEGYTLYAYASLQALAAAFNGAKSNKGEDAAKWLKANPVQTVMG----EKKW 349

Query: 356 EVKKNFPLSIVRNGKWERFG 375
           + K +  +S     +W++ G
Sbjct: 350 DSKGDLTVSDYVVYQWDKTG 369