Pairwise Alignments

Query, 530 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 534 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  139 bits (351), Expect = 2e-37
 Identities = 122/466 (26%), Positives = 213/466 (45%), Gaps = 39/466 (8%)

Query: 80  PLLATAWSQSKDGLQYTFELRKGVKWHDGK------DFTSADVAFSI-LTLKQVHP---- 128
           P LAT W  S DG+ YTF LR+GVK+H  K      DF + DV F+    L   HP    
Sbjct: 74  PALATKWDISPDGMTYTFHLREGVKFHSNKEFKPTRDFNADDVLFTFNRMLDPDHPFRKA 133

Query: 129 --------RGRGTFANVVDVKTPDANTAVIVLSKPSPFLLTALASTESPIVPKHLYEGTD 180
                    G     N+  V+  D +T V+ L+      +  +A + + I+     E   
Sbjct: 134 YPTEFPYFNGMSLNKNIAKVEKTDPHTVVMTLNTVDAAFIQNIAMSFAAILSAEYAEQLL 193

Query: 181 IAS--NKYNSAPVGTGPFVFKEWVQGSHIILERNPNYWDKPKPYLDRVVVRFVLDSAARA 238
            A   +  N  P+GTGPFVF+ + + S I    N  YWD  +  LD+++     D++ R 
Sbjct: 194 KAGKPSDINQKPIGTGPFVFQRYQKDSQIRYVANKQYWDPSRVKLDQLIFAINTDASVRV 253

Query: 239 AALESGAADLANGTGGIPLSDVERFGKLPGVQIDTRISPYLGSHQQIYFNLDTPALQKLE 298
             L++G   +   T     +DV+     P +++ T+    LG    I +N+      +LE
Sbjct: 254 QKLKAGECQV---TLHPRPADVDALKADPNLKLLTKPGFNLG---YIAYNVRHKPFDQLE 307

Query: 299 VRRAIAQAIDVNAFAKTVWYGYGTLSASPIGKGISRYHDASIQPYPFNPKEAEAALDAAG 358
           VR+A+  A++  +    V+ G G L+ + +      Y D SI+   +NP++A+  L AAG
Sbjct: 308 VRQALDMAVNKQSILNAVYQGAGQLAVNAMPPTQWSYDD-SIKDAAYNPEKAKELLKAAG 366

Query: 359 FKRGAGGTRLKLRVL--YNPFQERRAADFVRQSLGRIGIDATVESYDFATYVTKAYTDRA 416
            K G   T   + V   YNP   +  A+ ++    +IG+   + SY++  Y+ K   +  
Sbjct: 367 VKEGTEITLWAMPVQRPYNP-NAKLMAEMLQSDWAKIGLKVKIVSYEWGEYI-KRTKNGE 424

Query: 417 FDITLESLT-NLFDPTVGVQRVFWSKNFKVGLPFSNAAHYVNPEVDRLLEAAAVEVDEGK 475
            D++L   T +  DP   +  ++        +  +N + + +P  D+L++ A V  D  +
Sbjct: 425 HDVSLIGWTGDNGDPDNWLGTLYSCD----AIGGNNYSMWCDPAYDKLIKQAKVVTDREQ 480

Query: 476 RRQLFVDFQNIVHRDIPSIELGANPAITVATKKVRDY--APTGEHI 519
           R  L+   Q ++ + +P   +  +      + KV  +  +P G ++
Sbjct: 481 RTVLYKQAQQLLKQQVPITPVAHSTVNQPLSAKVEGFKVSPFGRNV 526