Pairwise Alignments

Query, 554 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  138 bits (347), Expect = 6e-37
 Identities = 133/506 (26%), Positives = 213/506 (42%), Gaps = 37/506 (7%)

Query: 43  LAALPFAAAAQTPVEGGTLTYAVSQEPTSLVSFLDTKTDNRNVSAK-VTEGLLRYDAKFT 101
           LA +P A AA T      L Y     P        T   + + SA+ V   L ++    T
Sbjct: 16  LACMPLAQAAST------LVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLTQFKRGGT 69

Query: 102 P-QPLLATAWQVSPDGLKYSFKLRPGVKFHDG------HDFTAEDVRY---------SVL 145
             +P LAT+W +S DGL Y+F LR GVKFH         DF A+DV +         S  
Sbjct: 70  EVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTFNRLLDAQSPF 129

Query: 146 TQKKQGPRGRIT----LANVERVDTPDPLTAVIVLSRPAPFLLKSLSSAELPIVPAHRYS 201
            Q         T       ++ VD  D  T    L+      +++L+ +   +  A   +
Sbjct: 130 RQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNLAMSFASVQSAEYAA 189

Query: 202 DGEPLGNPNIT--APVGTGPFVFEQWVRGSHLVLRKNPNYWRKGYPHLDRVIVKFVRDPA 259
                G        PVGTGPFVF+++ + S +    N  YW+     LD ++     D A
Sbjct: 190 QLLKQGKAEEINQKPVGTGPFVFKRYQKDSQIRYVANKQYWKPEDVKLDNLVFAITPDAA 249

Query: 260 AISTAVETGEVDVAQGVGLADLERLAGNPKLKVDDTYDGFLNNASFLEFNVDNPVLANPK 319
           +    ++ GE  V+     AD+E +  +P L V     GF  N  FL +NV +P L   K
Sbjct: 250 SRLQKLKAGECQVSGYPRPADIEVMKQDPNLHVLQ-QAGF--NLGFLAYNVTHPPLDQLK 306

Query: 320 VRHAIAQAIDRNFIRNTIYYKRVEVVNSPIPRVLSDYYDDSTFRYPFDVAAANRLLDEAG 379
           VR A+  AID+  I   +Y    ++  + +P      YD +    P+D   A  LL EAG
Sbjct: 307 VRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWS-YDPTIKDAPYDPTKAKALLKEAG 365

Query: 380 QPKQANGQRFSLRLSYIPGAEFKRTTDYLRSALARVGIKVEVVDGDLPTFLKHVYSTRDF 439
                    +++ +        + +   ++    +VGIK  +V  +   ++K   +    
Sbjct: 366 VAPGTTVNLWAMTVQRASNPNARMSAQMIQQDWEKVGIKANIVSYEWGEYIKRAKNGEHD 425

Query: 440 DININGLGRLFDPTVGVQRIYWGDGVRNPLIWINAAHYDNPQVDELFRQAAVELDTGKRA 499
            +     G   DP   +  +Y    V+      N A + NP  D+L +QA V  D  +R 
Sbjct: 426 AMIYGWTGDNGDPDNWLGVLYSCAAVKGS----NYAKWCNPAYDKLVQQAKVSNDREQRI 481

Query: 500 AQFKQIQQIVGRELPVLPLVSVPLIQ 525
             ++Q Q+I+  ++P+ P+ +  + Q
Sbjct: 482 KWYQQAQKILKEQVPITPIANSTVFQ 507