Pairwise Alignments

Query, 554 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 518 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  131 bits (330), Expect = 6e-35
 Identities = 125/470 (26%), Positives = 207/470 (44%), Gaps = 61/470 (12%)

Query: 77  DTKTDNRNVSAKVTEGLLRYDAKFTPQPLLATAWQVSPDGLKYSFKLRPGVKFHDGHDFT 136
           D  TD   V   + EGL+ +    +  PLLA   + S DG+ Y+F LR  V F +G   T
Sbjct: 44  DENTDT--VMLHIVEGLVAHREDASVGPLLAREVKRSDDGMTYTFTLRDRVHFQNGATLT 101

Query: 137 AEDVRYS---VLTQKKQ--------GPRGRITLANVERVDTPDPLTAVIVLSRPAPFLLK 185
           A+DV+++    L  K Q        G  G    A +  +DTPDPLT V  L +P+   L 
Sbjct: 102 AQDVKWTWERYLNPKTQWRCLAEFDGRGG----AKITGIDTPDPLTVVFHLDQPSGLFLA 157

Query: 186 SLSSAELP----IVPAHRYSDGEPLGNPNITAPVGTGPFVFEQWVRGSHLVLRKNPNYWR 241
           S++  +      + P    +DG      +  AP+GTGPF   +W  G ++VL +  +Y  
Sbjct: 158 SMARPDCGGSGILHPDSLAADG------SWKAPIGTGPFSLGEWKPGQYVVLSRFKDYSP 211

Query: 242 K------GYPHLDRVIVKFVR-----DPAAISTAVETGEVDVAQGVGLADLERLAGNPKL 290
           +      G+      +V  VR     DP++   A+ +  +D+   V  +D + L   P +
Sbjct: 212 RDDAGPDGFTGKKTALVDAVRFMVIPDPSSAKAALMSNNIDLLPNVSASDAQELKSTPGV 271

Query: 291 KVDDTYDGFLNNASFLEFNVDNPVLANPKVRHAIAQAIDRNFIRNTIYYKRVEVVNSPIP 350
           ++  ++   +     L F  ++P+L + ++R AIA ++D   +   +     E  NS IP
Sbjct: 272 QI--SFSPIMAICGLL-FQTNDPLLKDVRIRQAIAHSLDYGQMVTALSNGTSEPNNSAIP 328

Query: 351 RVLSDYYDDSTFRYPFDVAAANRLLDEAGQPKQANGQRFSLRLSYIPGAEFKRTTD--YL 408
           +    Y   +   Y +D   A RLL EAG   Q         +  I    + +  D   L
Sbjct: 329 QTSPFYSATAKQGYRYDPQEAQRLLKEAGYHGQP--------IKMIVNKRYSQMFDMGLL 380

Query: 409 RSALA-RVGIKVEVVDGDLPTFLKHVYSTRDFDININGLGRLFDPTVGVQRIYWGDGVRN 467
             A+A   G+ +++   +  T L+  Y + ++ +         DP      +  GD  + 
Sbjct: 381 SQAMAVASGLNIQMETLEWGTQLER-YQSGNYQMMAFSYSSRLDPATSFDSL-MGDKTKE 438

Query: 468 P-LIWINAAHYDNPQVDELFRQAAVELDTGKRAAQFKQIQQIVGRELPVL 516
           P  +W      DNPQ   + R A  E DT KR A F Q+  ++  + P++
Sbjct: 439 PRKVW------DNPQAQAVLRDAVRESDTAKRQALFDQLHTMMIHDTPMV 482