Pairwise Alignments

Query, 554 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  124 bits (310), Expect = 1e-32
 Identities = 122/466 (26%), Positives = 203/466 (43%), Gaps = 43/466 (9%)

Query: 104 PLLATAWQVSPDGLKYSFKLRPGVKFHD------GHDFTAEDVRYSVLTQ-KKQGPRGRI 156
           P LAT W+VS DG  Y+F LR GVKFH          F A+DV ++      K  P  + 
Sbjct: 73  PGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNRMLDKDNPFRKA 132

Query: 157 TLA------------NVERVDTPDPLTAVIVLSRPAPFLLKSLSSAELPIVPAHRYSDGE 204
                          N+ +V+  D  T    L+      +++L+ +   I  A  Y+D +
Sbjct: 133 YPTEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFASIQSAE-YAD-Q 190

Query: 205 PLGNPNIT----APVGTGPFVFEQWVRGSHLVLRKNPNYWRKGYPHLDRVIVKFVRDPAA 260
            L N         P+GTGPFVF ++ + + +  + N +YW+     +D +I     D + 
Sbjct: 191 LLKNGKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIFAITTDASV 250

Query: 261 ISTAVETGEVDVAQGVGLADLERLAGNPKLKVDDTYDGFLNNASFLEFNVDNPVL----A 316
               ++  E  V      AD+E L  +  L++     GF  N  ++ +NV + +     A
Sbjct: 251 RMQKLKKNECQVTLFPRPADIEPLKADKNLQMPQ-QAGF--NLGYIAYNVMDKIKGSNEA 307

Query: 317 NP----KVRHAIAQAIDRNFIRNTIYYKRVEV-VNSPIPRVLSDYYDDSTFRYPFDVAAA 371
           NP    KVR A+  A+D+  I  ++Y    ++ VN+  P   S  YDDS     FD   A
Sbjct: 308 NPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWS--YDDSIKDAAFDPEKA 365

Query: 372 NRLLDEAGQPKQANGQRFSLRLSYIPGAEFKRTTDYLRSALARVGIKVEVVDGDLPTFLK 431
            +LL EAG  +      +++ +        K   + L+S  A++GIK ++V  +   ++K
Sbjct: 366 KQLLKEAGIKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEWGEYIK 425

Query: 432 HVYSTRDFDININGLGRLFDPTVGVQRIYWGDGVRNPLIWINAAHYDNPQVDELFRQAAV 491
                    + I   G   DP   +  +Y  D V       N + +     D+L +QA  
Sbjct: 426 RSKGGEQGAMLIGWSGDNGDPDNWLGTLYGCDAVDGN----NFSKWCYKPYDDLIKQAKA 481

Query: 492 ELDTGKRAAQFKQIQQIVGRELPVLPLVSVPLIQVYSARVHNLNNS 537
             D  KR   +++ Q I+  ++P+ P+    + Q  SA+V +   S
Sbjct: 482 TSDQAKRTELYQKAQHILKEQVPITPIAHSTVYQPMSAKVKDFKIS 527