Pairwise Alignments

Query, 554 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 530 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  146 bits (369), Expect = 2e-39
 Identities = 129/517 (24%), Positives = 222/517 (42%), Gaps = 43/517 (8%)

Query: 44  AALPFAAAAQTPVE-GGTLTYAVSQEPTSLVSFLDTKTDNRNVSAKVTEGLLRYDAKFTP 102
           A L     +Q+PV     L +     P    +   T   + + +  +   L+ ++   T 
Sbjct: 9   ALLALGLVSQSPVLLANNLVFCSEGSPAGFDTAQYTSATDNDAAEPIYNRLVEFERGGTA 68

Query: 103 -QPLLATAWQVSPDGLKYSFKLRPGVKFHDG------HDFTAEDVRYSVLTQKKQGPRGR 155
             P LAT W+VS +GL+Y+F LR GV+FH          F A+DV ++      +G R R
Sbjct: 69  VHPALATHWEVSDNGLRYTFHLREGVRFHSNKAFSPSRTFNADDVLFTFNRMLDKGHRFR 128

Query: 156 ITLA-------------NVERVDTPDPLTAVIVLSRPAPFLLKSLSSAELPIVPAHRYSD 202
                            N+ RV+  DPLT V  L+      +++L+ +   I+ A     
Sbjct: 129 QAYPTEFPYFNGMGLDKNIARVEKTDPLTVVFTLNTVDAAFIQNLAMSFASILSAEYAEQ 188

Query: 203 GEPLGNPNIT--APVGTGPFVFEQWVRGSHLVLRKNPNYWRKGYPHLDRVIVKFVRDPAA 260
               G P+     P+GTGPFVF+++ + S +  + N +YW      +D ++     DP+ 
Sbjct: 189 LLASGRPSDINQQPIGTGPFVFQRYQKDSQIRYKGNKDYWAANEVKIDNLVFSINTDPSV 248

Query: 261 ISTAVETGEVDVAQGVGLADLERLAGNPKLKVDDTYD-----GFLNNASFLEFNVDNPVL 315
               +   E  V      ADL      P LK D T       GF  N  ++ +N  +P  
Sbjct: 249 RIQKLRRNECQVTLHPRPADL------PALKADSTLQVLQQPGF--NLGYIAYNTQHPPF 300

Query: 316 ANPKVRHAIAQAIDRNFIRNTIYYKRVE-VVNSPIPRVLSDYYDDSTFRYPFDVAAANRL 374
              +VR A+  A+++  I   +Y    +  VN+  P   S  YDDS    P+    A +L
Sbjct: 301 DRLEVRQAMDMAVNKEAILQAVYQDAGQRAVNAMPPTQWS--YDDSIKDAPYAPEKARQL 358

Query: 375 LDEAGQPKQANGQRFSLRLSYIPGAEFKRTTDYLRSALARVGIKVEVVDGDLPTFLKHVY 434
           + +AG         +++ +        K   + L++  +++G KV +V  +   +LK + 
Sbjct: 359 IQQAGVKPGTEITLWAMPVQRPYNPNAKLMAEMLQADWSKLGFKVRIVSYEWGEYLKRMK 418

Query: 435 STRDFDININGLGRLFDPTVGVQRIYWGDGVRNPLIWINAAHYDNPQVDELFRQAAVELD 494
           +       I   G   DP   +  +Y  D + +     N + + +PQ D L +QA    D
Sbjct: 419 NGEHDIALIGWTGDNGDPDNWLGTLYSCDAIGSN----NYSQWCDPQYDSLVKQAKQVTD 474

Query: 495 TGKRAAQFKQIQQIVGRELPVLPLVSVPLIQVYSARV 531
             +R A ++Q QQ + +++P+ P+    + Q  S +V
Sbjct: 475 RTQRTALYQQAQQRLKQQVPITPVAHSIVSQPLSVKV 511