Pairwise Alignments

Query, 549 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 535 a.a., Oligopeptide-binding protein AppA from Xanthobacter sp. DMC5

 Score =  426 bits (1095), Expect = e-123
 Identities = 226/525 (43%), Positives = 315/525 (60%), Gaps = 9/525 (1%)

Query: 24  LAAPSLASAASAAAAAAAPADAPRYTPDSVVTLLTAL--EPPTLVGLVNSAAGTFLVSPK 81
           +AA  +    +A  A   P++    TP    TL+T +  EP  L   VN+      VS  
Sbjct: 11  VAAAFIGLLPAAVLAQTVPSEG---TPKRGGTLVTIIQPEPTVLTTTVNNQFSNGAVSVN 67

Query: 82  TVEGLLSYDFDLRPRPQLAVAWEVQPDGLQYTFRLRRGVKWHDGRDFSSADVAFSILAL- 140
             +GL++YD +L  +P LA +WE+ PD L  TF LR GVKWHDG  F+SADV FS L + 
Sbjct: 68  IYDGLVAYDDNLGLKPALAESWEISPDKLTITFHLRHGVKWHDGAPFTSADVRFSALEIW 127

Query: 141 KASHPRGRATFASVSEVRTPDAHTAVLVLSKPAPFLLTALAAAESPIVPRHVYEGKDLAS 200
           K  H RGR TFA + +V TPDA+TA+     P+  +L+AL A E  ++P+H+YE  D+  
Sbjct: 128 KKVHSRGRLTFAELEDVETPDAYTAIFRFRAPSLVVLSALNAWEGQVLPKHLYENTDILK 187

Query: 201 HPANQAPIGTGPFVFKEWVRGSHVIYERNPNYWDPGKPYIDRLVVRFIPDQAAAAAALES 260
           +P N  P+GTGPF FK W +G  +   RN +YWD GKPY+DR++ RFIPD  A AAA+E 
Sbjct: 188 NPHNVEPVGTGPFKFKSWTKGEAIELVRNADYWDAGKPYLDRVIYRFIPDGGARAAAIEI 247

Query: 261 GTVDLAGATPVPIPDLDRLKDVPHLSLDTRGNEYFNNSTTRIEFNLDNRYFRHAKVRQAV 320
           G V  A   PVP  D++R++ +P+L +++RG E+ N     +EFNL N      +VR+A 
Sbjct: 248 GDVGYAAFDPVPFADIERVRKLPNLKVESRGYEW-NAKYYFLEFNLRNPILADIRVRRAF 306

Query: 321 AHAIDRDVILKTVWYGYGTAAPGPISPVLKAFHDPKVAVPRFDRKRAEALLDEAGFPRGA 380
           AHAIDR  +  TVW+G    A GPI    KAF+   V    FD K AE LLDEAG+ RGA
Sbjct: 307 AHAIDRQGLADTVWFGLVAPATGPIPSFTKAFYTADVPTYAFDPKEAERLLDEAGYKRGA 366

Query: 381 DGVRFRVSHDV--FDGGGNRVGQYIRQALARVGIDVTVRTQEFGAYIKRVYTDRDFDFNN 438
           +GVRF ++ D   F+    +  +YIRQ L RVG++V VR+Q+ GA+++RVY   DFD N 
Sbjct: 367 NGVRFSINQDFQPFNENFRKTAEYIRQNLKRVGVEVNVRSQDLGAFVRRVYGSYDFDINT 426

Query: 439 QGMSQMFDPTVGIQRFYWSKNFRPGVPFSNGAHYDNPEVDRLLEAAAVENDAAKRRALFG 498
              S   DP +G+ R +WSK+  PG+P++N + Y +P  D+++E      D  +R ALF 
Sbjct: 427 GQFSVFIDPELGLLRQFWSKSIAPGIPWTNASGYADPGTDKVIEGIKSAADPEQRVALFH 486

Query: 499 EFQRVIATDLPTIGLVAVAQVTVANRRIGGHTVGAEGLSGNFADI 543
           E QR +  DLP + L+ + Q TV N  + G +V  +G   +  DI
Sbjct: 487 ELQRRVQRDLPVLPLLELKQFTVYNTNVRGVSVRPDGAMSSLKDI 531