Pairwise Alignments

Query, 542 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  137 bits (344), Expect = 1e-36
 Identities = 130/507 (25%), Positives = 225/507 (44%), Gaps = 50/507 (9%)

Query: 38  AGSPVRGGTLTVLIDPEPPTLTTIAHSAGSSVLISAKTTEGLLTYDFDLSPQ---PQLAT 94
           A S V    L    +  P       ++ G+    SA+T    LT  F+       P LAT
Sbjct: 19  APSAVAASNLVFCSEGSPAGFDPGQYTTGTDFDASAETVFNRLT-QFERGGTAVIPGLAT 77

Query: 95  AWTVSADGLQYTFTLRRGVRWHD------GKPFTSADVAHSIGLL-------KQYHPRGR 141
            W VS DG  YTF LR GV++H        +PF + DV  +   +       ++ +P   
Sbjct: 78  KWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNRMLDKDNPFRKAYPTEF 137

Query: 142 ATFS------SVAEVRTPDAYTAVLVLSKP----VPYLLTALSASESPIVPRHLYESGKA 191
             F+      ++A+V   D +T    L++     +  L  + ++ +S      L ++GKA
Sbjct: 138 PYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFASIQSAEYADQLLKNGKA 197

Query: 192 DANPANNAPIGTGPFVFKEWVRGSHVTYERNPDYWDNPKPYVDRLIVRFIPDAAARAAAI 251
                N  PIGTGPFVF ++ + + + ++ N DYW      +D LI     DA+ R   +
Sbjct: 198 A--DINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIFAITTDASVRMQKL 255

Query: 252 EKGEVHLSPGTPVPLGDVERLRAKPNLVFEPN-----GYQYINNVSRVEFNLENPALQDL 306
           +K E  ++   P P  D+E L+A  NL          GY   N + +++ + E   +  L
Sbjct: 256 KKNECQVTL-FPRP-ADIEPLKADKNLQMPQQAGFNLGYIAYNVMDKIKGSNEANPMAQL 313

Query: 307 RVRQAIAHAINRQVVQKTVWYGQGQLIPGPVHPALRKFYVPDLPVLPHDVKRAEALLDAA 366
           +VRQA+  A++++ + ++V+ G GQL    + P  +  Y   +     D ++A+ LL  A
Sbjct: 314 KVRQALDMAVDKKKIIESVYQGAGQLAVNAM-PPTQWSYDDSIKDAAFDPEKAKQLLKEA 372

Query: 367 GFVRGKAGGNLRLKLAVVPIS---NEGGQRTAEYLKQSLGRIGIEVTIHSQDFATYVRRV 423
           G   G       + L  +P+    N   +  AE L+    +IGI+  I S ++  Y++R 
Sbjct: 373 GIKEG-----TEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEWGEYIKRS 427

Query: 424 YADRAFDLHVSVMSNTFDPTVGIQRLYWSKNFKKGLPFSNGSGYSNPEVDRLLEAAAVEI 483
                  + +    +  DP   +  LY        +  +N S +     D L++ A    
Sbjct: 428 KGGEQGAMLIGWSGDNGDPDNWLGTLYGC----DAVDGNNFSKWCYKPYDDLIKQAKATS 483

Query: 484 DEGRRRQAFAEFQRHIVRDLPDITLLA 510
           D+ +R + + + Q HI+++   IT +A
Sbjct: 484 DQAKRTELYQKAQ-HILKEQVPITPIA 509