Pairwise Alignments

Query, 1160 a.a., Transcription-repair coupling factor from Variovorax sp. SCN45

Subject, 1169 a.a., Transcription-repair-coupling factor from Xanthobacter sp. DMC5

 Score =  719 bits (1856), Expect = 0.0
 Identities = 453/1187 (38%), Positives = 660/1187 (55%), Gaps = 63/1187 (5%)

Query: 6    LTAGKRFTLPRPPLSADALLLAQLAMREKAAGRATAM--FTADANDAQRLID---EIAFF 60
            L  G+  TL R     + +++A LA R  AAG+       T    D QR+      +AFF
Sbjct: 11   LAEGRPLTLSRVADGMEGMVVADLA-RSIAAGKNAPWPSLTVVCRDGQRMAALERGLAFF 69

Query: 61   APELRCALFPDWETLPYDSFSPHQDLISER---LATLWRISQKEADVVLVPATTALYRLA 117
            APEL    FP W+ LPYD  SP+  +++ R   LA L RI    A V++      + R+ 
Sbjct: 70   APELEVIAFPSWDCLPYDRASPNASIVARRMAALAKLARIKGGAASVLITTVNATVQRVP 129

Query: 118  PPAFLAGYTFHFKAKQKLEESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSPV 177
                +A  +        +    +       G+     V   GEYAVRGGLIDLFP G   
Sbjct: 130  AKGLVASQSLVAAPGNAIALDGVTEWAEQNGFLRTPTVRDTGEYAVRGGLIDLFPPGLDA 189

Query: 178  PFRVDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEDARGRFRGRWRELLEGD 237
            P R+D F D ++SIR FDP+TQR+   +  + L+P  EF +  D   RFR  +       
Sbjct: 190  PIRLDFFGDTLESIRAFDPETQRTTSQLRALELVPMAEFQLTTDTMRRFRMAYIAQFGAA 249

Query: 238  PTKSRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGPDATVVLHGDLEPAFQHF---- 293
                 +Y+ +  G   AG+E++LPLF +   T+FDYL    T++L    E A        
Sbjct: 250  QKGDTLYEAVSEGRRHAGMEHWLPLFHERMDTLFDYL-EGGTLLLDPLAEEAGGERIAQI 308

Query: 294  --WQDTNERYRLVRGDPERPALPPEALFLNAEQFYQRAKPHAQLAIRGDVPTEAPYAEFD 351
              + D   + +   G P    LPP+ L+L   ++   +K  A + +    P   P     
Sbjct: 309  ADYYDARRQAQDQHGGPIYNPLPPDRLYLQGPEW---SKCLAGMRLARLSPFAVPEGGAG 365

Query: 352  RL--------PPFAVVRGAEDPLV--GLKAHIA--KTPHRVLLIAESDGRRESLLDFLRA 399
            ++          FA  R  +D  V     AH+   +   +V+L   S+G RE L   L  
Sbjct: 366  KVIDLGGVQGRSFAAERADQDANVFDAAIAHVRDLQKSKKVILAGWSEGSRERLGTVLAD 425

Query: 400  SGVNPPA----FDSLAEFEASADEKVGIATAALASGFAWREQGIDLVTETELFATAPTTR 455
             G+   A    FDSLA   A    +  +A   + +GF   +  +  + E ++        
Sbjct: 426  HGLKGCAAISRFDSLA---ALPRNQAALAVFGVEAGFETPDFAV--IGEQDILGDRLVRP 480

Query: 456  RRNKKQEQVSDVEALIKDLSELNVGDPVVHTAHGIGRYRGLIHMDLGQGTDAEGKPLLQE 515
            +R  ++ Q      ++ +L+ L  GD VVH  HGIGR+ GL      +  +A G P   +
Sbjct: 481  KRKARRPQ-----DVLTELTALTAGDLVVHVDHGIGRFIGL------KTVEAMGAP--HD 527

Query: 516  MLHLEYADKATLYVPVSQLHQISRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAE 575
             L L YA    L++PV  L  +SRY G    EA L KLG G W++ K +  +++R+ A+E
Sbjct: 528  CLELHYAGGDKLFLPVENLELLSRY-GSEDTEAQLDKLGGGAWQQRKARMKKRIREMASE 586

Query: 576  LLNIYARRAAREGHAFRYSPADYEVFANDFGFQETADQKAAIHAVVQDMISPQPMDRLVC 635
            L+ I A+R   E      +   Y+ F   F ++ET DQ+AAI +V+ D+ S  PMDRL+C
Sbjct: 587  LIKIAAQRQLGEAPKLVPAMGLYDEFRARFPYEETDDQEAAIDSVLDDLASGHPMDRLIC 646

Query: 636  GDVGFGKTEVALRAAFIAVTGGKQVAFLAPTTLLAEQHYQTLVDRFAKWPVKVAEMSRFR 695
            GDVGFGKTEVALRAAF     GKQVA + PTTLLA QH++T  DRF   PV VA+ SR  
Sbjct: 647  GDVGFGKTEVALRAAFAVALSGKQVAVVVPTTLLARQHFKTFSDRFHGLPVNVAQASRMV 706

Query: 696  SAKEITAAAKGLAEGQVDIVVGTHKLLSQSVKFKNLGLLIIDEEHRFGVRHKEAMKAMRA 755
            + K++TA  KG+++G VDIVVGTH LL +++ FK+LGL+I+DEE  FGV HKE +K +RA
Sbjct: 707  TGKDLTAVKKGISDGTVDIVVGTHALLGKAISFKDLGLVIVDEEQHFGVSHKERLKQLRA 766

Query: 756  EVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELK 815
            EV VLTLTATPIPRTL +A+ G+R+LS+IAT P  RLA++TF+      V+REA+LRE  
Sbjct: 767  EVHVLTLTATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFITPFDPLVVREALLRERY 826

Query: 816  RGGQVYFLHNEVETIENRRQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNLLLC 875
            RGGQ +++   +E +   R+ L   +PE ++AVAHGQ+    LE +M  F   +Y++LL 
Sbjct: 827  RGGQSFYVMPRIEDLGEVREFLAASVPEVKVAVAHGQLAAGALEDIMTAFYDGQYDVLLS 886

Query: 876  STIIETGIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAA 935
            +TI+E+G+DVP ANT+++ RAD FGLAQL+QLRGRVGR+  +AYA   VP T+ +T QA 
Sbjct: 887  TTIVESGLDVPNANTLIVHRADMFGLAQLYQLRGRVGRAKARAYAIFTVPATKPVTVQAE 946

Query: 936  QRLDAIQQMEELGSGFYLAMHDLEIRGTGEVLGESQSGNMTEIGFQLYNEMLSEAVRALK 995
            +RL  +Q +E LG+GF LA HDL+IRG G +LG+ QSG++ E+G++LY EML EA+  +K
Sbjct: 947  RRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQEMLQEAIAHIK 1006

Query: 996  AG---QEPDLLSPLSVTTEINLHAPALLPDDYCGDVHLRLSFYKKLATAKTPDQIDTLLE 1052
            AG      D  SP      I +  P L+P+DY  D+H+RL+ Y++LA  +   +ID+   
Sbjct: 1007 AGITDYVDDKWSP-----NITIGMPVLIPEDYVADLHVRLALYRRLADIQDDAEIDSFGA 1061

Query: 1053 EIVDRFGKLPPQAQTLIDTHRLRVLARPYGVVKVDAAPGIINITFKKDPPVDGMAIIQLI 1112
            E+VDRFG  P +   L+   +++ LAR   V KVDA P  + +TF+ +   D   +++LI
Sbjct: 1062 ELVDRFGPTPEEVGQLLKLTQIKALARKANVEKVDAGPKGVVLTFRNNEFSDPSGLVKLI 1121

Query: 1113 -QKNKHIKLAGNEKLRIERELKEPKERAQMVRDVLRSLGQPTVKENV 1158
              +    K+  + K+   R+    + R +    VL+ L   + ++ +
Sbjct: 1122 ANEGSQAKVRPDFKVVFLRDWPNAEHRLKGTLTVLKKLADLSARKGM 1168