Pairwise Alignments

Query, 1160 a.a., Transcription-repair coupling factor from Variovorax sp. SCN45

Subject, 691 a.a., ATP-dependent DNA helicase RecG from Pseudomonas simiae WCS417

 Score =  226 bits (577), Expect = 4e-63
 Identities = 162/429 (37%), Positives = 228/429 (53%), Gaps = 26/429 (6%)

Query: 595  PADYEVFANDFGFQETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAV 654
            PA Y   AN  GF  T  Q+   + +  D+   +PM RL+ GDVG GKT VA  AA  A+
Sbjct: 258  PAQY--LAN-LGFAPTGAQQRVGNEIAYDLSQQEPMLRLIQGDVGAGKTVVAALAALQAL 314

Query: 655  TGGKQVAFLAPTTLLAEQHYQTLVDRFAKWPVKVAEMSRFRSAKEITAAAKGLAEGQVDI 714
              G QVA +APT +LAEQH+ T         ++VA ++     K   AA + +A G   +
Sbjct: 315  EAGYQVALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKLKGKNRAAALEQIAGG-AQM 373

Query: 715  VVGTHKLLSQSVKFKNLGLLIIDEEHRFGVRHKEAMKAM----RAEVDVLTLTATPIPRT 770
            VVGTH L    V+FKNL L+IIDE+HRFGV+ + A++      R     L +TATPIPRT
Sbjct: 374  VVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVGGRMNPHQLIMTATPIPRT 433

Query: 771  LGMALEGLRDLSVIATAPQRRLAIKTFVRNEGTGV-IREAVLRELKRGGQVYFLHNEVE- 828
            L M+     D S++   P  R  + T +  +   V + E V      G Q Y++   +E 
Sbjct: 434  LAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRGACAEGRQAYWVCTLIEE 493

Query: 829  -------TIENRRQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIET 881
                     E   + L   L E ++ + HG+M   E   VM DF A    LL+ +T+IE 
Sbjct: 494  SEELTCQAAETTYEDLTSALGELKVGLIHGRMKPAEKAAVMADFKAGNLQLLVATTVIEV 553

Query: 882  GIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAI 941
            G+DVP A+ +++   ++ GLAQLHQLRGRVGR    ++  L+      L++   QRL   
Sbjct: 554  GVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPP--LSQIGRQRLGI- 610

Query: 942  QQMEELGSGFYLAMHDLEIRGTGEVLGESQSGNMT-EIGFQLYNEMLSEAVR-ALKAGQE 999
              M E   GF +A  DLE+RG GE+LG  Q+G +  ++   + +  L  AVR A +A  E
Sbjct: 611  --MRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPAVRDAAQALLE 668

Query: 1000 --PDLLSPL 1006
              PD +SPL
Sbjct: 669  RWPDHVSPL 677