Pairwise Alignments

Query, 1160 a.a., Transcription-repair coupling factor from Variovorax sp. SCN45

Subject, 692 a.a., junction-specific ATP-dependent DNA helicase from Pseudomonas putida KT2440

 Score =  228 bits (581), Expect = 1e-63
 Identities = 158/457 (34%), Positives = 236/457 (51%), Gaps = 21/457 (4%)

Query: 531 VSQLHQISRYTGVSADEAPLHKLGSGQ-WEKAKRKAAEQVRDSAAELLNIYARRAAREGH 589
           ++ L +  RY      +A L +L  GQ W + +    E +    ++     + R+ R   
Sbjct: 192 LAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQRLRESLRSLRAPV 251

Query: 590 AFRYSPADYEVFANDFGFQETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRA 649
             R +    +  AN  GFQ T  Q+   + +  D+   +PM RLV GDVG GKT VA  A
Sbjct: 252 LPRATRLQAQYLAN-LGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDVGAGKTVVAALA 310

Query: 650 AFIAVTGGKQVAFLAPTTLLAEQHYQTLVDRFAKWPVKVAEMSRFRSAKEITAAAKGLAE 709
           A  A+  G QVA +APT +LAEQHY T         ++VA ++     K   A+ + +A 
Sbjct: 311 ALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGKARAASLEQIAN 370

Query: 710 GQVDIVVGTHKLLSQSVKFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDV----LTLTAT 765
           G   +VVGTH L  + V+FK+L L IIDE+HRFGV+ + A++      ++    L +TAT
Sbjct: 371 G-APMVVGTHALFQEEVRFKHLALAIIDEQHRFGVQQRLALRRKGVAGELCPHQLIMTAT 429

Query: 766 PIPRTLGMALEGLRDLSVIATAPQRRLAIKT-FVRNEGTGVIREAVLRELKRGGQVYFLH 824
           PIPRTL M+     D SV+   P  R  + T  V +     + E V      G Q Y++ 
Sbjct: 430 PIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAACAEGRQAYWVC 489

Query: 825 NEVE--------TIENRRQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNLLLCS 876
             +E          E+  ++L   L E ++ + HG+M   E   +M +F A    LL+ +
Sbjct: 490 TLIEESEELTCQAAESTYEELGSALGELKVGLIHGRMKPAEKAEIMAEFKAGNLQLLVAT 549

Query: 877 TIIETGIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQ 936
           T+IE G+DVP A+ +++   ++ GLAQLHQLRGRVGR    ++  L+      L++   +
Sbjct: 550 TVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHPP--LSQIGRE 607

Query: 937 RLDAIQQMEELGSGFYLAMHDLEIRGTGEVLGESQSG 973
           RL     M E   GF +A  DLE+RG GE+LG  Q+G
Sbjct: 608 RLGI---MRETNDGFIIAEKDLELRGPGEMLGTRQTG 641