Pairwise Alignments

Query, 1160 a.a., Transcription-repair coupling factor from Variovorax sp. SCN45

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 1114 bits (2881), Expect = 0.0
 Identities = 596/1137 (52%), Positives = 776/1137 (68%), Gaps = 20/1137 (1%)

Query: 7    TAGKRFTLPRPPLSADALLLAQLAMREKAAGRATAMFTADANDAQRLIDEIAFFAPELRC 66
            TAGK+ T    P +A +L +A+ A    +AGR T + TAD+  A RL  E+ FFAP+L  
Sbjct: 12   TAGKQ-TWGNLPGAALSLAIAEAA---SSAGRFTLLLTADSQAADRLEQELRFFAPDLPV 67

Query: 67   ALFPDWETLPYDSFSPHQDLISERLATLWRISQKEADVVLVPATTALYRLAPPAFLAGYT 126
              FPDWETLPYD FSPHQD+IS+R+A+L+R+ +    +++VP TTAL+RLAP  FL G +
Sbjct: 68   LPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSS 127

Query: 127  FHFKAKQKLEESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSPVPFRVDLFDD 186
                  Q ++  +++ +L  +GY  V  V   GE+AVRG LIDLFPMGS +P+R+DLFD+
Sbjct: 128  LVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDN 187

Query: 187  EIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEDARGRFRGRWRELLEGDPTKSRIYKD 246
            EI+++RTFDP+TQRS+  V  VRLLP REFPM ++   RF+ R+RE  + D  +S I++D
Sbjct: 188  EIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQD 247

Query: 247  MGNGVATAGIEYYLPLFFDETATVFDYLGPDATVVLHGDLEPAFQHFWQDTNERYRLVRG 306
            + +G+  AGIEYYLPLFF+ET+T+FDYL  D  V     +E A +HFW D   RY   RG
Sbjct: 248  LASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRRG 307

Query: 307  DPERPALPPEALFLNAEQFYQRAKPHAQLAIRGDVPTEAPYAE---FDRLPPFAVVRGAE 363
            D  RP LPP  LFL  E  + R K   ++ +  +        E      LP  A+   A 
Sbjct: 308  DLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALPNLAIEAKAN 367

Query: 364  DPLVGLKAHIAKTPHRVLLIAESDGRRESLLDFLRASGVNPPAFDSLAEFEASADEKVGI 423
             PL  L   + + P RVL  AES GRRE LL+ L    + P   +   +F   A E++ I
Sbjct: 368  QPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITGA-ERLAI 426

Query: 424  ATAALASGFAWREQGIDLVTETELFATAPTTRRRNKKQEQVSDVEALIKDLSELNVGDPV 483
              A L  G    + G+ L+ E+ LF      RRR  K+ + ++ +A+IK+L+EL  G PV
Sbjct: 427  TIAPLDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETAN-DAVIKNLTELREGAPV 485

Query: 484  VHTAHGIGRYRGLIHMDL-GQGTDAEGKPLLQEMLHLEYADKATLYVPVSQLHQISRYTG 542
            VH  HG+GRY GL  +++ GQ           E L LEYA+ A LYVPV+ LH I+RYTG
Sbjct: 486  VHIDHGVGRYLGLATLEIDGQAA---------EFLTLEYAENAKLYVPVANLHLIARYTG 536

Query: 543  VSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSPADYEVFA 602
                 APLH+LGS  W+KAKRKAAEQVRD AAELL+IYARRAAR+G+AF    ADY  F+
Sbjct: 537  SDDALAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFS 596

Query: 603  NDFGFQETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQVAF 662
              F F+ET DQ+AAI AV  DM++P+PMDRLVCGDVGFGKTEVA+RAAFIAV  G+QVA 
Sbjct: 597  AGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAV 656

Query: 663  LAPTTLLAEQHYQTLVDRFAKWPVKVAEMSRFRSAKEITAAAKGLAEGQVDIVVGTHKLL 722
            L PTTLLA+QHY +  DRFA WPV V  MSRF+SAKE+ AAA  LAEG++DI++GTHKLL
Sbjct: 657  LVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLL 716

Query: 723  SQSVKFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLS 782
               V+FK+LGL IIDEEHRFGVR KE +KA+R+EVD+LTLTATPIPRTL MA+ G+RDLS
Sbjct: 717  QDDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLS 776

Query: 783  VIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILP 842
            +IAT P RRL+++TFV  +    ++EA+LREL RGGQVY+LHN+V+TIE     L E++P
Sbjct: 777  IIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836

Query: 843  EARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLA 902
            EARI + HGQM ERELE+VM DF  +R+N+L+ STIIETGIDVP+ANTIV+ RADKFGLA
Sbjct: 837  EARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLA 896

Query: 903  QLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRG 962
            QLHQLRGRVGRSHHQAYAYL+ P  + ++  A +RL+AI   ++LG+GF LA +DLEIRG
Sbjct: 897  QLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRG 956

Query: 963  TGEVLGESQSGNMTEIGFQLYNEMLSEAVRALKAGQEPDLLSPLSVTTEINLHAPALLPD 1022
             GE+LGE QSG +  +GF LY EML  AV+A++ G +P+L  PL    EINL  PAL+P+
Sbjct: 957  AGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPE 1016

Query: 1023 DYCGDVHLRLSFYKKLATAKTPDQIDTLLEEIVDRFGKLPPQAQTLIDTHRLRVLARPYG 1082
            DY  DVH RL  YK++A+A   + +  L  E++DRFG LP   + L+    L++ A   G
Sbjct: 1017 DYLPDVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLG 1076

Query: 1083 VVKVDAAPGIINITFKKDPPVDGMAIIQLIQ-KNKHIKLAGNEKLRIERELKEPKER 1138
            + KVDA P    + F+ + PVD + +I+LIQ + K  K  G  + R    ++ P ER
Sbjct: 1077 IKKVDAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDER 1133