Pairwise Alignments

Query, 267 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 320 a.a., Amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  105 bits (262), Expect = 1e-27
 Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 10/211 (4%)

Query: 56  LLWGLFTNIKISVLAMALGTVAGLVVGALSLSPLRFLRVVTRWYVQFFRNAPVLVLIYFT 115
           L WGL+T + ISV++ ALG V GL  G   LS    LR ++  YV+  R  P+LV I+  
Sbjct: 118 LAWGLWTTLWISVVSGALGLVIGLFAGLCRLSNNPTLRDLSTVYVELVRGTPLLVQIFIF 177

Query: 116 TYVFPFELHLVKWTVPFPDWIKVVLGLALPTSAVVAEIFRGAIQSIPSAQWEAAQSLAFR 175
            +     L+L +           V  LAL T A VAEI R  +QSI   Q EAA+SL   
Sbjct: 178 YFFIGTVLNLSREFAG-------VAALALFTGAYVAEIVRAGVQSIAKGQNEAARSLGLN 230

Query: 176 RSEIFRLIVLPQCLRRMLPPWMNLYASITMSTALASLVGAHDVVDTAQIASNTVARTDFT 235
             +  R ++LPQ  +R+LPP    + S+   T+L S++   ++  + + A  T   +  T
Sbjct: 231 AGQSMRHVILPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELTKSGREAITT---SFST 287

Query: 236 VLVYFTLLGVFFAYCYPIARATRALERRHAR 266
             ++F + G++     P++     LERR A+
Sbjct: 288 FEIWFCVAGLYLLINLPLSHIASRLERRLAQ 318