Pairwise Alignments

Query, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 536 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

 Score =  402 bits (1032), Expect = e-116
 Identities = 227/526 (43%), Positives = 312/526 (59%), Gaps = 7/526 (1%)

Query: 10  IRSALLAALLAAGLAAHAAP--PSHSGTLTLLSTSEPTAL-VTIGNVATPILSVSAKVTE 66
           +R A   A LAA   A AA   P   G L  +   EP  L +T+ N   P + ++  V +
Sbjct: 8   LRLAAAGASLAAVPMARAADGSPVRGGHLVSIVVPEPQTLGLTVSN---PTIVIAINVYD 64

Query: 67  GLLKYDYDVNPQPQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSI-ELLKKI 125
           GL+ YD    P+PQLA  +  +PDG + TF LR+GV WHDG  FT+ADV YSI E++KK 
Sbjct: 65  GLVTYDGTGAPRPQLAESYEQAPDGRSITFRLRKGVTWHDGVPFTAADVKYSILEVVKKT 124

Query: 126 HPRGRNTFANLTAIDTPDKYTAILRLSKPAPYLIRALVATETPIVPKHIYEGTDPANNPN 185
           HPRG  T++ L  I+TPD +T ILRL+KP+P +  AL ++ET I+PKH+YEGTDP  NP 
Sbjct: 125 HPRGIGTYSQLQDIETPDDHTVILRLAKPSPVIWSALNSSETQILPKHLYEGTDPLTNPW 184

Query: 186 NNAPIGTGPFKFKEWVRGSHIVYERNNDYWDKPKPFVDQLIVRFVTDPAAAAVAFETGTV 245
           N  PIGTGPF FKEWVRGSH+  ERN +YWD  KP++D+L  RFV D  A A A ETG  
Sbjct: 185 NTKPIGTGPFIFKEWVRGSHVTLERNPNYWDAGKPYLDRLTFRFVPDAGARAAALETGEA 244

Query: 246 DLGYRTPVPLADLERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFKNEKVRQAVAHAI 305
                +PVPL+D+ERL K P L  ET+G    + V  L+FN+    F++ +VR+A+A AI
Sbjct: 245 QYVPLSPVPLSDVERLAKRPDLVVETRGWEAVAPVFFLDFNMRRPQFQDVRVRRAIALAI 304

Query: 306 DRNVIVKVVNYGYGQVSYSPIAPGLKAFHDPAPSPYAFDVKKANALLDEAGFPKKAGGVR 365
           D+  + + V YG+ + +  P+     AF       Y +D KKA ALLDEAG  +   GVR
Sbjct: 305 DKKALARTVWYGFAEPATGPVPAFQTAFAATGLPQYDYDPKKAEALLDEAGLKRGPDGVR 364

Query: 366 FSVPLDFNPIGADGPRLADYLRSALARIGIAVTVRAQDPSAFIKRIYTDRDFAFTHNGAS 425
                   P G D  R  +++R  L ++GI V +   D   F+++IYT+ DF   +   +
Sbjct: 365 LRFNHVSIPYGDDFKRSGEFIRQQLKKVGIEVELLNYDLPTFLRKIYTEYDFDTLNAYYA 424

Query: 426 NLFDPTVGVQRLYWSKNFIKGVPFSNGTHYQNPVVDKLLEDAAVENDPGKRLKLFKDFQD 485
              DP +GVQR +WS+    G  +SN + Y NP VD LLE AAVE DP KR  L  +FQ 
Sbjct: 425 AFADPQIGVQRRFWSQTIRPGSAWSNASGYSNPKVDALLEAAAVEPDPQKRKALLGEFQL 484

Query: 486 TVARDVPDLNLYQPVFITIANQRVHDHSLTADGVESNLADVWVDDA 531
            V  ++P ++L +     + + R+   ++   GV S+ AD W++ A
Sbjct: 485 IVQTELPSISLLELKQFRVWSSRLKGVNVGPIGVYSSFADAWLEPA 530