Pairwise Alignments

Query, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 547 a.a., Oligopeptide-binding protein AppA from Xanthobacter sp. DMC5

 Score =  563 bits (1452), Expect = e-165
 Identities = 284/533 (53%), Positives = 370/533 (69%), Gaps = 16/533 (3%)

Query: 11  RSALLAALLAAGL---AAHAAP-----------PSHSGTLTLLSTSEPTALVTIGNVATP 56
           R A+L  LLAA     AA AAP           P   G L  L   EP+ LV+I + A P
Sbjct: 16  RRAVLKGLLAAACVLGAAAAAPVWAADAQSTPQPVRGGVLRFLVEHEPSTLVSIAHTAGP 75

Query: 57  ILSVSAKVTEGLLKYDYDVNPQPQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVA 116
              VS KVTEGLL YD D NP+P LAT+W +SPDGLTYTF LR+GVKWHDG+DFT+ DVA
Sbjct: 76  TQRVSPKVTEGLLAYDLDFNPKPALATEWSVSPDGLTYTFKLREGVKWHDGRDFTADDVA 135

Query: 117 YSIELLKKIHPRGRNTFANLTAIDTPDKYTAILRLSKPAPYLIRALVATETPIVPKHIYE 176
           YSI+LLK+ HPRGR TFA++TA++TPD +TAI+RLSKPAPYL+ AL A E+PIV KHIY 
Sbjct: 136 YSIQLLKEGHPRGRATFASVTAVETPDPHTAIIRLSKPAPYLLTALDANESPIVAKHIYA 195

Query: 177 GTDPANNPNNNAPIGTGPFKFKEWVRGSHIVYERNNDYWDKPKPFVDQLIVRFVTDPAAA 236
           GTDP  N N  APIGTGPF FKEWVRGSHI+ ERN DYWD  KP++D+++VRF+ D +A 
Sbjct: 196 GTDPLTNKNGAAPIGTGPFLFKEWVRGSHIILERNPDYWDADKPYLDRVVVRFIADQSAR 255

Query: 237 AVAFETGTVDLGYRTPVPLADLERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFKNEK 296
           A AFETG +DL    PVP +DL R++ +P L  ET+G  Y+ N+T+L FN D    K+++
Sbjct: 256 AAAFETGELDLAGGPPVPRSDLARVQALPNLGSETRGYEYNGNMTQLYFNFDTPQLKDKR 315

Query: 297 VRQAVAHAIDRNVIVKVVNYGYGQVSYSPIAPGLKAFHDPAPSPYAFDVKKANALLDEAG 356
           VR A+A A+D N ++ VV +GYG ++ SP+ P LK F DP+  PY FD+K AN LLDEAG
Sbjct: 316 VRLAIAQALDLNKLLDVVYFGYGTIAPSPVGPDLKKFVDPSIKPYPFDLKAANRLLDEAG 375

Query: 357 FPKKAGGVRFSVPLDFNPIGADGPRLADYLRSALARIGIAVTVRAQDPSAFIKRIYTDRD 416
           +P+KA G RF++ L  NP   +G    D+++ ALA++GI V  +  D S +I++ YT R+
Sbjct: 376 YPRKADGTRFALRLYANPF--NGRESGDFVKQALAKVGIPVDFQFFDFSTYIQKAYTGRE 433

Query: 417 FAFTHNGASNLFDPTVGVQRLYWSKNFIKGVPFSNGTHYQNPVVDKLLEDAAVENDPGKR 476
           F  T    SN FDPT G+QR++WSKNF  G+PFSN +HY NP VD LLE  AVE+DP KR
Sbjct: 434 FDLTLESLSNTFDPTPGIQRIFWSKNFKIGLPFSNASHYDNPQVDALLEAGAVESDPEKR 493

Query: 477 LKLFKDFQDTVARDVPDLNLYQPVFITIANQRVHDHSLTADGVESNLADVWVD 529
            +++  FQ  +  DV  ++L  P  +TI N++V +H+L   G  ++ ADVW++
Sbjct: 494 RQIWFAFQKAIHDDVAAVHLIAPQGVTIFNKKVKNHTLGVTGPNASFADVWIE 546