Pairwise Alignments

Query, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  145 bits (365), Expect = 5e-39
 Identities = 148/541 (27%), Positives = 228/541 (42%), Gaps = 55/541 (10%)

Query: 11  RSALLAALLAAGLAAHAAPPSHSGTLTLLSTSEPTALVTIGNVATPILSVSAK-VTEGLL 69
           R AL   LLAAGL A       + TL   S + P         +      SA+ V   L 
Sbjct: 3   RIALKPLLLAAGLLACMPLAQAASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLT 62

Query: 70  KYDYD-VNPQPQLATKWVISPDGLTYTFTLRQGVKWH------DGKDFTSADVAYSIELL 122
           ++       +P LAT W IS DGLTYTF LR GVK+H        +DF + DV ++   L
Sbjct: 63  QFKRGGTEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTFNRL 122

Query: 123 -------KKIHP--------RGRNTFANLTAIDTPDKYTAILRLSKPAPYLIRALVATET 167
                  ++ +P         G NT   + ++D  D +T    L+      ++ L  +  
Sbjct: 123 LDAQSPFRQAYPSESPYFTDMGLNT--TIKSVDKLDDHTVRFNLNNVDASFVQNLAMSFA 180

Query: 168 PIVPKHIYEGTDPANNPN--NNAPIGTGPFKFKEWVRGSHIVYERNNDYWDKPKPFVDQL 225
            +                  N  P+GTGPF FK + + S I Y  N  YW      +D L
Sbjct: 181 SVQSAEYAAQLLKQGKAEEINQKPVGTGPFVFKRYQKDSQIRYVANKQYWKPEDVKLDNL 240

Query: 226 IVRFVTDPAAAAVAFETGTVDL-GYRTPVPLADLERLKKVPALRFETKGNSYSSNVTRLE 284
           +     D A+     + G   + GY  P   AD+E +K+ P L    +      N+  L 
Sbjct: 241 VFAITPDAASRLQKLKAGECQVSGYPRP---ADIEVMKQDPNLHVLQQA---GFNLGFLA 294

Query: 285 FNLDNEYFKNEKVRQAVAHAIDRNVIVKVVNYGYGQVSYSPIAPGLKAFHDPAPSPYAFD 344
           +N+ +      KVRQA+  AID+  I+K V    GQ++ + + P   ++ DP      +D
Sbjct: 295 YNVTHPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSY-DPTIKDAPYD 353

Query: 345 VKKANALLDEAGFPKKAGGV-----RFSVPLDFNPIGADGPRLADYLRSALARIGIAVTV 399
             KA ALL EAG    A G        +V    NP   +    A  ++    ++GI   +
Sbjct: 354 PTKAKALLKEAGV---APGTTVNLWAMTVQRASNP---NARMSAQMIQQDWEKVGIKANI 407

Query: 400 RAQDPSAFIKRIYTDRDFAFTHNGASNLFDPTVGVQRLYWSKNFIKGVPFSNGTHYQNPV 459
            + +   +IKR       A  +    +  DP   +  LY S   +KG   SN   + NP 
Sbjct: 408 VSYEWGEYIKRAKNGEHDAMIYGWTGDNGDPDNWLGVLY-SCAAVKG---SNYAKWCNPA 463

Query: 460 VDKLLEDAAVENDPGKRLKLFKDFQDTVARDVP-----DLNLYQPVFITIANQRVHDHSL 514
            DKL++ A V ND  +R+K ++  Q  +   VP     +  ++QP+   + + ++    L
Sbjct: 464 YDKLVQQAKVSNDREQRIKWYQQAQKILKEQVPITPIANSTVFQPLRKEVKDFKISPFGL 523

Query: 515 T 515
           T
Sbjct: 524 T 524