Pairwise Alignments

Query, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 534 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  164 bits (414), Expect = 1e-44
 Identities = 141/506 (27%), Positives = 232/506 (45%), Gaps = 37/506 (7%)

Query: 10  IRSALLA-ALLAAGLAAHAAPPSHSGTLTLLSTSEPTALVTIGNVATPILSVSAKVTEGL 68
           + SA+ A +LLA     HAA      +L   S   P    T           +  +   L
Sbjct: 6   VLSAMFATSLLAVATMGHAADKR---SLVFCSEGSPAGFDTAQYTTATDNDAAEPLYNRL 62

Query: 69  LKYDY-DVNPQPQLATKWVISPDGLTYTFTLRQGVKWHDGK------DFTSADVAYSI-E 120
           ++++  +    P LATKW ISPDG+TYTF LR+GVK+H  K      DF + DV ++   
Sbjct: 63  VEFEKGETGVVPALATKWDISPDGMTYTFHLREGVKFHSNKEFKPTRDFNADDVLFTFNR 122

Query: 121 LLKKIHP------------RGRNTFANLTAIDTPDKYTAILRLSKPAPYLIRALVATETP 168
           +L   HP             G +   N+  ++  D +T ++ L+      I+ +  +   
Sbjct: 123 MLDPDHPFRKAYPTEFPYFNGMSLNKNIAKVEKTDPHTVVMTLNTVDAAFIQNIAMSFAA 182

Query: 169 IVPKHIYEGTDPANNPN--NNAPIGTGPFKFKEWVRGSHIVYERNNDYWDKPKPFVDQLI 226
           I+     E    A  P+  N  PIGTGPF F+ + + S I Y  N  YWD  +  +DQLI
Sbjct: 183 ILSAEYAEQLLKAGKPSDINQKPIGTGPFVFQRYQKDSQIRYVANKQYWDPSRVKLDQLI 242

Query: 227 VRFVTDPAAAAVAFETGTVDLGYRTPVPLADLERLKKVPALRFETKGNSYSSNVTRLEFN 286
               TD +      + G   +    P P AD++ LK  P L+  TK      N+  + +N
Sbjct: 243 FAINTDASVRVQKLKAGECQVTLH-PRP-ADVDALKADPNLKLLTKP---GFNLGYIAYN 297

Query: 287 LDNEYFKNEKVRQAVAHAIDRNVIVKVVNYGYGQVSYSPIAPGLKAFHDPAPSPYAFDVK 346
           + ++ F   +VRQA+  A+++  I+  V  G GQ++ + + P   ++ D      A++ +
Sbjct: 298 VRHKPFDQLEVRQALDMAVNKQSILNAVYQGAGQLAVNAMPPTQWSYDDSIKDA-AYNPE 356

Query: 347 KANALLDEAGFPKKAGGVRFSVPLDFNPIGADGPRLADYLRSALARIGIAVTVRAQDPSA 406
           KA  LL  AG  +      +++P+   P   +   +A+ L+S  A+IG+ V + + +   
Sbjct: 357 KAKELLKAAGVKEGTEITLWAMPVQ-RPYNPNAKLMAEMLQSDWAKIGLKVKIVSYEWGE 415

Query: 407 FIKRIYTDRDFAFTHNGASNLFDPTVGVQRLYWSKNFIKGVPFSNGTHYQNPVVDKLLED 466
           +IKR               +  DP   +  LY S + I G   +N + + +P  DKL++ 
Sbjct: 416 YIKRTKNGEHDVSLIGWTGDNGDPDNWLGTLY-SCDAIGG---NNYSMWCDPAYDKLIKQ 471

Query: 467 AAVENDPGKRLKLFKDFQDTVARDVP 492
           A V  D  +R  L+K  Q  + + VP
Sbjct: 472 AKVVTDREQRTVLYKQAQQLLKQQVP 497