Pairwise Alignments

Query, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 518 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  130 bits (328), Expect = 9e-35
 Identities = 117/464 (25%), Positives = 193/464 (41%), Gaps = 52/464 (11%)

Query: 59  SVSAKVTEGLLKYDYDVNPQPQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAYS 118
           +V   + EGL+ +  D +  P LA +   S DG+TYTFTLR  V + +G   T+ DV ++
Sbjct: 49  TVMLHIVEGLVAHREDASVGPLLAREVKRSDDGMTYTFTLRDRVHFQNGATLTAQDVKWT 108

Query: 119 IELLKKIHPR----------GRNTFANLTAIDTPDKYTAILRLSKPAPYLIRALVATETP 168
            E  + ++P+          GR   A +T IDTPD  T +  L +P+   + ++   +  
Sbjct: 109 WE--RYLNPKTQWRCLAEFDGRGG-AKITGIDTPDPLTVVFHLDQPSGLFLASMARPDCG 165

Query: 169 IVPKHIYEGTDPANNPNNNAPIGTGPFKFKEWVRGSHIVYERNNDY-----------WDK 217
                I      A + +  APIGTGPF   EW  G ++V  R  DY             K
Sbjct: 166 --GSGILHPDSLAADGSWKAPIGTGPFSLGEWKPGQYVVLSRFKDYSPRDDAGPDGFTGK 223

Query: 218 PKPFVDQLIVRFVTDPAAAAVAFETGTVDLGYRTPVPLADLERLKKVPALRFETKGNSYS 277
               VD +    + DP++A  A  +  +DL     V  +D + LK  P ++      S  
Sbjct: 224 KTALVDAVRFMVIPDPSSAKAALMSNNIDL--LPNVSASDAQELKSTPGVQISF---SPI 278

Query: 278 SNVTRLEFNLDNEYFKNEKVRQAVAHAIDRNVIVKVVNYGYGQVSYSPIAPGLKAFHDPA 337
             +  L F  ++   K+ ++RQA+AH++D   +V  ++ G  + + S I      +   A
Sbjct: 279 MAICGLLFQTNDPLLKDVRIRQAIAHSLDYGQMVTALSNGTSEPNNSAIPQTSPFYSATA 338

Query: 338 PSPYAFDVKKANALLDEAGFP----KKAGGVRFSVPLDFNPIGADGPRLADYLRSALARI 393
              Y +D ++A  LL EAG+     K     R+S   D   +           ++     
Sbjct: 339 KQGYRYDPQEAQRLLKEAGYHGQPIKMIVNKRYSQMFDMGLLS----------QAMAVAS 388

Query: 394 GIAVTVRAQDPSAFIKRIYTDRDFAFTHNGASNLFDPTVGVQRLYWSKNFIKGVPFSNGT 453
           G+ + +   +    ++R Y   ++       S+  DP      L   K            
Sbjct: 389 GLNIQMETLEWGTQLER-YQSGNYQMMAFSYSSRLDPATSFDSLMGDKT------KEPRK 441

Query: 454 HYQNPVVDKLLEDAAVENDPGKRLKLFKDFQDTVARDVPDLNLY 497
            + NP    +L DA  E+D  KR  LF      +  D P + +Y
Sbjct: 442 VWDNPQAQAVLRDAVRESDTAKRQALFDQLHTMMIHDTPMVIIY 485