Pairwise Alignments

Query, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 511 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  155 bits (391), Expect = 4e-42
 Identities = 144/522 (27%), Positives = 222/522 (42%), Gaps = 33/522 (6%)

Query: 17  ALLAAGLAAHAAPPSHSGTLTLLSTSEPTALVTIGNVATPILSVSAKVTEGLLKYDYDVN 76
           AL  A  A  AAP   +G +T+ S  +P +   I        +V+  + +GL     D+ 
Sbjct: 14  ALAMAATAFTAAPAFAAGKMTISSPQDPGSWDPIDTFLVQWAAVATNIFDGLTYRGPDLK 73

Query: 77  PQPQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSIE-LLKKIHPRG--RNTF 133
             P LA  W    +G    F LRQ VK+H+G+ F +A V ++ E LL +   +G  R+ +
Sbjct: 74  LAPGLAESWEELDEGKRIRFKLRQNVKFHNGEPFNAAAVKFTFERLLGEQGAKGPQRSNY 133

Query: 134 ANLTAIDTPDKYTAILRLSKPAPYLIRALVATETPIV-PKHIYEGTDPANNPNNNAPIGT 192
             + ++D  D YT  ++L  P P L+  L      IV P +I E  +   N N   P+GT
Sbjct: 134 VAIESVDVIDDYTVDMKLKAPDPVLLTKLAGYGGMIVPPAYIKEKGEDNFNLN---PVGT 190

Query: 193 GPFKFKEWVRGSHIVYERNNDYWDKPKPFVDQLIVRFVTDPAAAAVAFETGTVDLGYRTP 252
           G FKF  +   ++I  E N DYW    P + +L  RF+ +P+ A    + G VDL     
Sbjct: 191 GAFKFVSYAPKNNIKLEANPDYWG-GAPKLSELEYRFIAEPSTAVAELQAGRVDLVIPPT 249

Query: 253 VPLADLERLKKVPALRFETKGNSYS---SNVTRLEFNLDNEYFKNEKVRQAVAHAIDRNV 309
           +P+        +P +  ++K    S     V  L FN  +    + KVR+A+  A+DR  
Sbjct: 250 IPIG------MIPVIEGDSKLQIVSVPGPTVDALRFNTRDGITADPKVRKAIIMAVDRGT 303

Query: 310 IVKVVNYGYGQVSYSPIAPGLKAFHDPAPSPYAFDVKKANALLDEAGFPKKAGGVRFSVP 369
           IVK +  G      +     L   +DP   P  +D   A  LL EAG    A     ++ 
Sbjct: 304 IVKSILAGQAS-EIASFQSALSFGYDPELKPLPYDPDGAKKLLAEAGVKPGA-----ALQ 357

Query: 370 LDFNPIGADGPRLADYLRSALARIGIAVTVRAQDPSAFIKRIYTD--RDFAFTHNGASNL 427
           +D     A    +A  + S L+ +GI  T++  + +  +  I         F        
Sbjct: 358 IDIRGNDATMNEVAQVISSYLSMVGITATIKPYETNVLLNDIIPQGKTGAMFQQKWGGWT 417

Query: 428 FDPTVGVQRLYWSKNFIKGVPFSNGTHYQNPVVDKLLEDAAVENDPGKRLKLFKDFQDTV 487
           FD       +Y S    K  P+      ++  +DKLLE      D  +R K+ K+     
Sbjct: 418 FDYDNTAYSMYHSGE--KWNPYD-----KDEKLDKLLESQRPLTDRAEREKILKELGSYT 470

Query: 488 ARDVPDLNLYQPVFITIANQRVHDHSLTADGVESNLADVWVD 529
           A    ++ LY    I   N+RV       D     L DV V+
Sbjct: 471 AERALEIPLYNTNAIYGINKRVKGFVAPPDN-RLKLTDVTVE 511