Pairwise Alignments

Query, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 565 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  320 bits (821), Expect = 7e-92
 Identities = 205/536 (38%), Positives = 281/536 (52%), Gaps = 9/536 (1%)

Query: 2   FFSSSSFPIRSALLAALLAA---GLAAHAAPPSHSG-TLTLLSTSEPTALVTIGNVATPI 57
           F S      RS L  +L  A   GLA  AA    SG  L + + SEP  L      +  +
Sbjct: 30  FMSPVQLSRRSLLKTSLALAATTGLAGIAAAQEKSGGRLIVAADSEPKNLNPAIVASNGV 89

Query: 58  LSVSAKVTEGLLKYDYDVNP--QPQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADV 115
             +++K+ E L +  ++     +P+LAT+W  S DGL+ TF LR+GV WHDGK FTSADV
Sbjct: 90  FYIASKIVEPLAEASFNGKGGLEPRLATEWQGSDDGLSATFKLREGVTWHDGKPFTSADV 149

Query: 116 AYS-IELLKKIHPRGRNTFANLTAIDTPDKYTAILRLSKPAPY-LIRALVATETPIVPKH 173
           A+S + + K +   GR  FANL  ++TP+ +TA+   SKP P+ LIR  +   T +VPKH
Sbjct: 150 AFSALSVWKPLQNLGRLVFANLEKVETPNDHTAVFHFSKPTPFQLIRNALPVVTSVVPKH 209

Query: 174 IYEGTDPANNPNNNAPIGTGPFKFKEWVRGSHIVYERNNDYWDKPKPFVDQLIVRFVTDP 233
           +YEGTD A NP N  P+GTGPF F E+  G +    RN +YW K +P +D++I R + D 
Sbjct: 210 LYEGTDIATNPANTKPVGTGPFVFAEYKPGEYYRLTRNPNYWAKNQPQLDEIIYRVLPDR 269

Query: 234 AAAAVAFETGTVDLGYRTPVPLADLERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFK 293
           A AA A E   + L   + VPLADL R+ K P ++    G    +    +E N   +   
Sbjct: 270 AGAASALEAEEIQLAAFSAVPLADLARIAKQPGIKVIADGYEALTYQLVVEINHRRKELA 329

Query: 294 NEKVRQAVAHAIDRNVIVKVVNYGYGQVSYSPIAPGLKAFHDPAPSPYAFDVKKANALLD 353
           + KVR+A+AHAID+  ++  V  GY   S  P+      F+      Y FDV KANALLD
Sbjct: 330 DLKVRKAIAHAIDKKFVIDKVFLGYATASTGPVPKNAPEFYTDDVETYDFDVAKANALLD 389

Query: 354 EAGFPKKAGGVRFSVPLDFNPIGADGPRLADYLRSALARIGIAVTVRAQDPSAFIKRIYT 413
           EAG+ +   G RF++ L   P   +  +   YLR AL  IGI   +   D +A  K +YT
Sbjct: 390 EAGYARGPDGTRFALKLLPAPYFNETKQFGSYLRQALQEIGIDAELVNNDAAAHQKAVYT 449

Query: 414 DRDFAFTHNGASNLFDPTVGVQRLYWSKNFIKGVPFSNGTHYQNPVVDKLLEDAAVENDP 473
           D  F           DP +    L  S     GV FSN   Y+N  +D L++ AA     
Sbjct: 450 DHAFDLAIAPPVFRGDPAISTTILVRS-GIPAGVGFSNQGGYENKTLDTLIDKAAETVHA 508

Query: 474 GKRLKLFKDFQDTVARDVPDLNLYQPVFITIANQRVHDHSLTADGVESNLADVWVD 529
             R  L+KDFQ  VA D+P +N+ +  FIT+A   V   +       SN AD  VD
Sbjct: 509 AARTALYKDFQKQVAADLPLINVAEWGFITVARDTVKHVASNPRWAVSNWADTAVD 564