Pairwise Alignments

Query, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 553 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  148 bits (374), Expect = 5e-40
 Identities = 124/429 (28%), Positives = 200/429 (46%), Gaps = 31/429 (7%)

Query: 87  ISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSIELL-----KKIHPRGRNTFANLTAIDT 141
           IS DGL +   LR  VKWHDGK FT+ DV +++ELL     +     G     +LT + +
Sbjct: 106 ISADGLAWKVKLRDDVKWHDGKPFTAEDVKFTLELLVDPNFRSWRKTGHEFVRDLTVV-S 164

Query: 142 PDKYTAILRLSKP-APYLIRALVATETPIVPKHIYEGTDPANN-PNNNAPIGTGPFKFKE 199
           P + T   ++ KP APY     +   T I PKH+       N    NNAP+GTG FK+KE
Sbjct: 165 PTEIT--WKMEKPFAPY---PSILASTFITPKHLLGAEADRNTAAYNNAPVGTGAFKWKE 219

Query: 200 WVRGSHIVYERNNDYWDKPKPFVDQLIVRFVTDPAAAAVAFETGTVD---LGYRTPVPLA 256
            V G +I+ E N DY+    P +++LI ++V D       F+TG +D   L + TP    
Sbjct: 220 RVAGDYILLEANADYFG-DGPHIERLIYKYVPDLNVLYTQFKTGDIDVVGLQWITP---- 274

Query: 257 DLERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFKNEKVRQAVAHAIDRNVIVKVVNY 316
             +   +   L  +       S +  L FN++   FK+  VR+A+  AID+  I++ + Y
Sbjct: 275 --DHYDEAKDLSGKVVNVVPGSTIESLSFNMERPQFKDPAVREALYAAIDKQSIIEALYY 332

Query: 317 GYGQVSYSPIAPGLKAFHDPAPSPYAFDVKKANALLDEAGFPKKAGGVRF--SVPLDFNP 374
           G    + S + P    +++P    + + +++A  LL++AG+   A GVR    V L F  
Sbjct: 333 GLPAPTESYV-PQQSFYYNPDLPKHEYSIERAKKLLEDAGWVAGADGVRAKDGVKLAFTC 391

Query: 375 IGADGPRLAD----YLRSALARIGIAVTVRAQDPSAFIKRIYTDRDFAFTHNGASNLFDP 430
               G  + +    Y++ +   IG+ +T+    P+      +    F     G   L  P
Sbjct: 392 STTAGNHIREQVQQYIQQSFKDIGVEMTISNLPPAVMWGDYWMLSKFDSVIVGLDFLTGP 451

Query: 431 TVGVQRLYWSKNF-IKGVPFSNGTHYQNPVVDKLLEDAAVENDPGKRLKLFKDFQDTVAR 489
                  + S +   KG    N   + N  VD+LL        P +R  ++   Q+ + +
Sbjct: 452 DPDTSDFFRSTSSPAKGGSGQNTWQFANKEVDELLAKGGSLFVPEERKAVYLKIQEIMRK 511

Query: 490 DVPDLNLYQ 498
           ++P L L+Q
Sbjct: 512 ELPLLPLFQ 520