Pairwise Alignments

Query, 813 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Variovorax sp. SCN45

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score =  635 bits (1639), Expect = 0.0
 Identities = 357/806 (44%), Positives = 497/806 (61%), Gaps = 98/806 (12%)

Query: 20  LLKNLNAEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAGGILAVTFTNK 79
           LL +LN  Q  AV    G  L+LAGAGSGKTRVL  RIAWL+Q  Q S   IL+VTFTNK
Sbjct: 9   LLNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNK 68

Query: 80  AAKEMMTRLTAILPVNVRGMWIGTFHGLCNRLLRAHWKLANLPSTFQILDTQDQLSAIKR 139
           AA EM  R+  +L +N  GMW+GTFHGL +RLLRAHW+ A L   FQILD+ DQ   IKR
Sbjct: 69  AAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128

Query: 140 LMKQFNVDDERFPAKQTQWFIAGAKEDGLRPGDIEVRSDDDRKKV-ELYQLYEEQCQREG 198
           +M++  +D++++PA+Q QWFI G K++GLRP  I+   D     + E+Y  YE+ C+R G
Sbjct: 129 VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMREVYTAYEQACERAG 188

Query: 199 VVDFGELMLRSYELLRDNAPVREHYQRRFRHILIDEFQDTNRLQYAWIKMLAGNTVGGQF 258
           V+DF EL+LR+ +L RD+  + EHYQRRFRH+L+DEFQDTN +QYAW+++LA    GG  
Sbjct: 189 VIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAR---GG-- 243

Query: 259 EPGRDNSVIAVGDDDQSIYAFRGARVGNMTDFVREFDVRHQIKLEQNYRSYSNILDSANE 318
                +S++AVGDDDQSIY +RGA++ N+  +  +F     I+LEQNYRS   IL +AN 
Sbjct: 244 -----DSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANA 298

Query: 319 LISHNKKRLGKNLRTDQGPGEPVRVYESTTDLAEAQWMVEEMRQLARDGFDRKEMAVLYR 378
           LI++N  RLGK L TD G GEP+ +Y +  +  EA+++VE +  L + G  R E+A+LYR
Sbjct: 299 LIANNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYR 358

Query: 379 SNAQSRVIETALFNASVPYRVYGGLRFFERAEIKHALAYLRLLENKDDDTSFLRVVNFPP 438
           SNAQSRV+E AL    +PYR+YGG RFFERAEIK+A+AYLRL+E + +D +  RV+N PP
Sbjct: 359 SNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPP 418

Query: 439 RGIGARTLETLQDAARAAGRSLHDAV------SVVGGKAGANLTGFVAKIDVLREQTQGV 492
           RGIG +T+E +++ AR +  S+ +A+        + G+A + L  F+  I+ L  +   +
Sbjct: 419 RGIGEKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDM 478

Query: 493 SLREIIELVLDHSGLVEHYKADR--EGADRIENLDELVNAAESFVTQEGFGRDAVALPVD 550
            L  + +  ++ SGL+ +++ ++  +G  R+ENL+ELV+AA +F                
Sbjct: 479 PLHTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNF---------------- 522

Query: 551 ELRQSPASQGIDLTRPVIDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAGQDAVQL 610
                              E    DA+    LSPL+AFL HA+LE+GD QA   +D++QL
Sbjct: 523 -------------------ESTDEDAD----LSPLSAFLGHASLEAGDTQADEHEDSIQL 559

Query: 611 MTVHAAKGLEFDCVFITGMEEGLFPHENSMSDFESLEEERRLMYVAITRARKRLYLSHSQ 670
           MT+H+AKGLEF  VF+ GMEEGLFPH+ S+ +   LEEERRL YV ITRA ++L +++++
Sbjct: 560 MTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRLAYVGITRAMRQLVMTYAE 619

Query: 671 TRMLHGQTRYNVKSRFFEELPQGALKWLTPKN---QGFGGGTSAFGYGGGYGSTRGGAGG 727
           TR L+G   YN  SRF  E+P G ++ +   N   + FGG  +A                
Sbjct: 620 TRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSRPFGGAKTA---------------- 663

Query: 728 GGGYGGGSSYGGGSRDKDTFASPPVPPQKTAPSHGLRSGMQVFHNKFGEGTVTALEGTGD 787
                          + + FA+  +P  +TA       G +V H  FGEG +   EG+G 
Sbjct: 664 --------------TNSNLFANASIP--QTA----FNLGQRVQHAVFGEGVILNFEGSGA 703

Query: 788 DARAQVKFARHGVKWLALSVAKLTPI 813
            AR QV FA  G KWL L  AKL  +
Sbjct: 704 QARVQVNFA-EGSKWLMLGYAKLEAV 728