Pairwise Alignments

Query, 813 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Variovorax sp. SCN45

Subject, 669 a.a., helicase a single-stranded DNA dependent ATPase from Pseudomonas putida KT2440

 Score =  337 bits (864), Expect = 1e-96
 Identities = 235/685 (34%), Positives = 349/685 (50%), Gaps = 52/685 (7%)

Query: 21  LKNLNAEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAGGILAVTFTNKA 80
           +  LN  Q  A     G  L+LAGAGSGKT V+T +IA L+Q   + A  I+A+TFTNKA
Sbjct: 1   MSRLNPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKA 60

Query: 81  AKEMMTRLTAIL-PVNVRGMWIGTFHGLCNRLLRAHWKLANLPSTFQILDTQDQLSAIKR 139
           A+EM  R+  +L P   RG+ + TFH L   ++R   +       F I D  D  + +  
Sbjct: 61  AREMKERVATLLRPGEGRGLTVCTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLSD 120

Query: 140 LM-KQFNVDDERFPAKQTQWFIAGAKEDGLRPGDIEVRSDDDRKKVE--LYQLYEEQCQR 196
           +M K+++ DD     K     I   K D + P +   ++ + R++    +Y  Y+   + 
Sbjct: 121 IMQKEYSGDDGIDEIKN---MIGAWKNDLVLPPEALEKARNPREQTAAIVYTHYQRTLKA 177

Query: 197 EGVVDFGELMLRSYELLRDNAPVREHYQRRFRHILIDEFQDTNRLQYAWIKMLAGNTVGG 256
              VDF +L+L+  +L +++  V E +Q R R++L+DE+QDTN  QY  +KML G     
Sbjct: 178 FNAVDFDDLILQPVKLFQEHPEVLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGMR--- 234

Query: 257 QFEPGRDNSVIAVGDDDQSIYAFRGARVGNMTDFVREFDVRHQIKLEQNYRSYSNILDSA 316
                  N    VGDDDQSIYA+RGAR  N+     ++     + LEQNYRS S IL  A
Sbjct: 235 -------NQFTVVGDDDQSIYAWRGARPENLMLLKEDYPSLKIVMLEQNYRSTSRILRCA 287

Query: 317 NELISHNKKRLGKNLRTDQGPGEPVRVYESTTDLAEAQWMVEEMRQL-ARDGFDRKEMAV 375
           N LI++N     K L ++ G G+ +RV     + AEA+ +  E+  L  R      + A+
Sbjct: 288 NVLIANNPHAFEKQLWSEMGVGDEIRVIRCKNEEAEAERVAMEILTLHLRTNRPYSDFAI 347

Query: 376 LYRSNAQSRVIETALFNASVPYRVYGGLRFFERAEIKHALAYLRLLENKDDDTSFLRVVN 435
           LYR N Q+++IE  L +  VPYR+ GG  FF R E+K  +AYLRLL N DDD ++LRV+N
Sbjct: 348 LYRGNYQAKLIELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDNAYLRVIN 407

Query: 436 FPPRGIGARTLETLQDAARAAGRSLHDAVSVVGGKAGANLTG-FVAKIDVLREQTQGVSL 494
            P R IG+ TLE L + A   G S++ A   +G   G +L   +  ++   +    GV  
Sbjct: 408 VPRREIGSTTLEKLGNYATERGISMYAASEELG--LGEHLDARYTERLQRFKHWLDGVRH 465

Query: 495 REIIELVLDHSGLVEHYKADREGADRIENLDELVNAA--ESFVTQEGFGRDAVALPVDEL 552
           +  +E                   D I  L E++     E+++ Q+     A    +   
Sbjct: 466 KVALE-------------------DPIAALHEMIRDIDYENWIRQQTASDKAAEFRI--- 503

Query: 553 RQSPASQGIDLTRPVIDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAGQDAVQLMT 612
                   +      +   L  D E   T+      L    +     + +   + VQ+MT
Sbjct: 504 ------SNVWFLVEALKNTLEKDEEGDMTIEDAIGKLVLRDMLERQQEEEENAEGVQMMT 557

Query: 613 VHAAKGLEFDCVFITGMEEGLFPHENSMSDFESLEEERRLMYVAITRARKRLYLSHSQTR 672
           +HA+KGLEF  VFI GMEE + PH +S+ + +++EEERRL YV ITRAR+ L  + +  R
Sbjct: 558 LHASKGLEFPYVFIMGMEEEILPHRSSI-EADTIEEERRLAYVGITRARQTLAFTFAAKR 616

Query: 673 MLHGQTRYNVKSRFFEELPQGALKW 697
             +G+      SRF +ELP   L W
Sbjct: 617 KQYGEIIDCTPSRFLDELPPDDLAW 641