Pairwise Alignments

Query, 813 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Variovorax sp. SCN45

Subject, 752 a.a., Superfamily I DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  437 bits (1125), Expect = e-127
 Identities = 286/807 (35%), Positives = 423/807 (52%), Gaps = 79/807 (9%)

Query: 21  LKNLNAEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAGGILAVTFTNKA 80
           L+ LN  Q  AV    G  +I+AGAGSGKTRVLT RIA L++   V    ILA+TFTNKA
Sbjct: 4   LEGLNPPQREAVEHTEGPLMIIAGAGSGKTRVLTFRIAHLIRAKNVDPFQILALTFTNKA 63

Query: 81  AKEMMTRLTAILPVNVRGMWIGTFHGLCNRLLRAHWKLANLPSTFQILDTQDQLSAIKRL 140
           A EM  R+  ++ +  R  W+GTFH +  ++LR   +    PS F I DT D  S IK +
Sbjct: 64  ASEMRNRIERLIGLEARNTWMGTFHSIFAKILRVESEKLGFPSNFTIYDTDDSKSLIKSI 123

Query: 141 MKQFNVDDERFPAKQTQWFIAGAKEDGLR----PGDIEVRSDDDR----KKVELYQLYEE 192
           +K+  +DD+ +        I+GAK   +       D  +++DD+     +  E+Y+ Y++
Sbjct: 124 VKEKRLDDKVYKPNTVLSRISGAKNRLISWENYINDPYIKADDEAAMKPRMGEIYRAYQK 183

Query: 193 QCQREGVVDFGELMLRSYELLRDNAPVREHYQRRFRHILIDEFQDTNRLQYAWIKMLAGN 252
           +  +   +DF +L+  +  L RD+  V   YQ+RFR++L+DEFQDTN  QY   K LA  
Sbjct: 184 RLFKSSAMDFDDLLFNTNVLFRDHPDVLNKYQQRFRYVLVDEFQDTNLSQYLITKKLAAV 243

Query: 253 TVGGQFEPGRDNSVIAVGDDDQSIYAFRGARVGNMTDFVREFDVRHQIKLEQNYRSYSNI 312
                       ++  VGDD QSIYAFRGA + N+ +F +++   H +KLEQNYRS  NI
Sbjct: 244 ----------HQNICVVGDDAQSIYAFRGADIQNILNFEKDYPDLHVVKLEQNYRSTKNI 293

Query: 313 LDSANELISHNKKRLGKNLRTDQGPGEPVRVYESTTDLAEAQWMVEEM-RQLARDGFDRK 371
           +++AN +I  NK +L KN+ T  G G+ + + +S +D  E + +   +  +         
Sbjct: 294 VEAANSIIEKNKAQLKKNVWTQNGNGDLIELIKSASDNEEGRMVASTIFEEKNNKKLQNS 353

Query: 372 EMAVLYRSNAQSRVIETALFNASVPYRVYGGLRFFERAEIKHALAYLRLLENKDDDTSFL 431
           + A+LYR+N+QSR +E AL   ++ Y++ GGL F++R EIK  +AY R + N+DD+ +F 
Sbjct: 354 DFAILYRTNSQSRALEEALRKMNISYKIVGGLSFYQRKEIKDLMAYFRYVVNQDDEEAFK 413

Query: 432 RVVNFPPRGIGARTLETLQDAARAAGRSLHDAV----SVVGGKAGANLTGFVAKIDVLRE 487
           R++N+P RGIG  ++E +  AA      L   V    S + G+A  +++ F   I   + 
Sbjct: 414 RIINYPKRGIGLSSVEKMMVAAYEHDIPLWQVVTNSSSFLSGRASNSVSDFATMIKSFQM 473

Query: 488 QTQGVSLREIIELVLDHSGLVEHYKADR--EGADRIENLDELVNAAESFVTQEGFGRDAV 545
           + +     E    +   SGL+     D+  EG +R EN+ EL+NA + +V          
Sbjct: 474 EVERKDAYEAASTIAKQSGLLRELYEDKTIEGLNRYENVQELLNAIKEYV---------- 523

Query: 546 ALPVDELRQSPASQGIDLTRPVIDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAGQ 605
                                  D P   D   G       AFL   AL + +++ +   
Sbjct: 524 -----------------------DNPENEDKNLG-------AFLQEIALLTDNDRDKDEM 553

Query: 606 DAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDFESLEEERRLMYVAITRARKRLY 665
           DAV LMT+H++KGLEF  VF+ G+EE LFP +  M   E LEEERRL YVA TRA ++LY
Sbjct: 554 DAVTLMTIHSSKGLEFRQVFVVGLEEDLFPSQMMMQSREDLEEERRLFYVATTRAMEKLY 613

Query: 666 LSHSQTRMLHGQTRYNVKSRFFEELPQGALKWLTPKNQGFGGGTSAFGYGGGYGSTRGGA 725
           LS++ TR   G+      SRF EE+    ++    K +G     S FG           +
Sbjct: 614 LSYAITRYRFGRLLNCEPSRFLEEIDPSCIR--VTKRRGQQPTGSHFG-------RNNDS 664

Query: 726 GGGGGYGGGSSYGGGSRDKDTFAS--PPVPPQKTAPSHGLRSGMQVFHNKFGEGTVTALE 783
            G  G+ G  +    S  K+T A    P P  K + +  L +GM+V H KFG G V  +E
Sbjct: 665 EGRSGFVGLKT---PSVRKNTTAKVHTPSPDFKPSNTSNLAAGMKVEHPKFGFGKVLKVE 721

Query: 784 GTGDDARAQVKFARHGVKWLALSVAKL 810
             G + +A + F   G K L LS AKL
Sbjct: 722 VEGLNKKATIGFDNFGEKTLLLSFAKL 748