Pairwise Alignments

Query, 773 a.a., 3'-to-5' exoribonuclease RNase R from Variovorax sp. SCN45

Subject, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

 Score =  647 bits (1668), Expect = 0.0
 Identities = 353/755 (46%), Positives = 484/755 (64%), Gaps = 35/755 (4%)

Query: 20  LDEFEGTVQGHRDGHGFVQRDDGEADIYLPPNEMRAVLHKDRVKARVVRQDRRGRPEGRV 79
           LD   G V GHRDG GF+  DDG  D++L P++MR V   DR  ARV   DRRGR EG +
Sbjct: 86  LDLICGRVSGHRDGFGFLIPDDGSEDLFLSPSQMRLVFDGDRGLARVSGVDRRGRREGVL 145

Query: 80  VEIVERSEQPIIGRLLHEGGIWLVAPEDKRYGQDVLIPKGATGPAKVGQVVVVQLTEPPA 139
           VE++ R+ + ++GR   EGGI  V P++ +  Q+VL+  G  G AK+GQ V +++T  P 
Sbjct: 146 VEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEVLVTAGRNGGAKIGQFVEIKITHWPT 205

Query: 140 LFGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEFSAECLAEAKALPEKVRPADKKGRV 199
              QP G V EV+G    PGMEI++A+R Y +PH +  + + EA+    +V   DK+ RV
Sbjct: 206 PRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHVWPNDVVKEARKFRSEVEEKDKEKRV 265

Query: 200 DLTDIPLVTIDGEDARDFDDAVYCEPAKVGR--GKGWRLLVAIADVSAYVQTGSGIDIDA 257
           DL  +P VTIDGEDARDFDDAVYCEP    R    GWRL VAIADVS+YV+ GS +D++A
Sbjct: 266 DLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSGGWRLYVAIADVSSYVRLGSALDVEA 325

Query: 258 YDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVERLCMVCDMLVAADGEIYAYQFYPAVMF 317
             R  SVYFP RV+PMLPE+LSNGLCSLNP V+RL MVC+M +   G++  YQFY  V+ 
Sbjct: 326 QQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTMNKAGQMVDYQFYEGVIH 385

Query: 318 SHARFTYTEVAAILGNTRGPEAA----KRKDRVKDLLNLADVYKALLKQRGKRGAVDFET 373
           SHAR TY +V+++L ++R  E      + K+ V DL NL ++YK L++ R  RGA+DFET
Sbjct: 386 SHARLTYNKVSSMLEHSRTREGKALREEYKEVVPDLKNLYNLYKVLVEARHTRGAIDFET 445

Query: 374 TETQIICDDAGRIEKIVPRTRNEAHRLIEEAMLAANVCSADFIAEGKHPGLFRVHEGPTP 433
            ET+II  +  +I +I P  RN+AH+LIEE MLAANV +A+F+ +   P L+RVH+GP P
Sbjct: 446 QETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAANVATAEFLQKHGVPALYRVHDGPPP 505

Query: 434 EKKEILRGYLKAMGVGLSITDDPKPGEFQAIAEATKERPDAQQIHTMLLRSMQQAIYTPI 493
           E+ E LR +L  +G+ L    DP P ++QA+  +   RPD   I T++LRS+ QA+Y+  
Sbjct: 506 ERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASIAGRPDFHLIQTVMLRSLSQAVYSTE 565

Query: 494 NSGHFGLAYEAYTHFTSPIRRYPDLLVHRVIKAILGKTRYQLPMLPTPGEAHAKLAKRLA 553
           N+GHFGL YEAYTHFTSPIRRYPDLLVHR I++I+ +++   P        H K A  ++
Sbjct: 566 NNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSII-RSKVDTP--------HVKRAGAMS 616

Query: 554 SRVKAPTNKPQKATVAPSKEVLAWEAAGLHCSANERRADEASRDVEAWLKCKYMREHLGE 613
                      KA + P  E    E  G  CS  ERRADEA+RDV  WLKC++M++ +GE
Sbjct: 617 I---------PKARIYPYDE-NTLEQLGEQCSMTERRADEATRDVVNWLKCEFMKDRVGE 666

Query: 614 EYGGVVTAATTFGIFVTLDAMYVEGLVHITELGGEYFKFDEMRQELRGERTGIRYAIGTR 673
            + GV+TA T FG+FV L  +YVEGLVH++ L G+Y+ FD +   L GERTG  + +G  
Sbjct: 667 TFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGRSFRLGDT 726

Query: 674 VRVQVSRVDLDGRKIDFRLVREGEELMARAMKDKGAASSGVPVKASAKRGTRHKAAEAGG 733
           + V+V RVDLD RKIDF +    E+ +A  +  K   ++ V  KA  +  T  KA     
Sbjct: 727 IEVKVMRVDLDERKIDFEV---SEKTLAAPIGRKQRGAAPVAEKAEQQPATEAKATP--- 780

Query: 734 GEPRGERGTSASA-GPQSAMQAFKSAVKKAANKMK 767
            +PR  +  ++ A  P+ A+Q  ++A  + + +MK
Sbjct: 781 -KPRSRKSEASEAYFPKDAVQ--RNAEVRKSREMK 812