Pairwise Alignments

Query, 387 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

Subject, 384 a.a., ABC transporter substrate-binding protein from Magnetospirillum magneticum AMB-1

 Score =  177 bits (449), Expect = 4e-49
 Identities = 120/386 (31%), Positives = 199/386 (51%), Gaps = 16/386 (4%)

Query: 9   TRGTLAAVLTACG-VASALAAD-LKVGLSVSLSGPNSSLGVPYAKG---MQAALAYKGEV 63
           T G   AV++  G  ASALAAD +K+G+ +S++G  S +G P  +    M   +  +G V
Sbjct: 6   TAGAALAVMSGLGYAASALAADPIKIGMFLSVTGQMSPMGDPQKRTFDYMIEKINAQGGV 65

Query: 64  NGRKVQLIVLDDGSDPTTAGRNARKLIEDEKVDVLMGTSGVPAAIAMAQVGKEAKTPMIG 123
            GRKV+ ++ DDGS+P  A    ++LI+++KVD+++G SG P ++A+  + + A+ P + 
Sbjct: 66  LGRKVEAVIYDDGSEPEKAATFVKRLIDNDKVDLIIGGSGTPTSMAVLGLIERAEVPYLS 125

Query: 124 LT--PILLDPNENPWVMTVAQPTQLMIDAVVERMKRNNVKTVGYIGFSDAWGDLVYDALM 181
           L     + DP    W     Q  +L  + V+  +K+  +  +  +  +  +G   +D  +
Sbjct: 126 LGGGTAIGDPVRK-WTFKFPQSDRLAAEKVLVDLKKRGLTKIALLSENVGFGKSGHDQTV 184

Query: 182 KAAPGAGIKVVSNERYARADASVTGQVLKIVALRP-DAVMTGGAGTPGALPFLALQERGY 240
           K AP  GI+++ +E Y+  D  VT Q+ KI       A+   G GT  A+    L++ G 
Sbjct: 185 KLAPQHGIEILIDEVYSPKDPDVTPQLTKIRGTAGVQALFIFGTGTGPAVVTKNLRQMGL 244

Query: 241 KGGVYGQHGLINPDFVRVVGAAGQNALMPTGPVIVAEQLPDNYPTKKIATDFRAVFQKVN 300
               Y  HG+ + +F+R+VG A     +P G   VAEQLP N P K +   F+  +++ N
Sbjct: 245 NLPTYQSHGVASKEFLRLVGTAADGMRLPAGAQAVAEQLPANDPQKAVTMAFKKEYEEKN 304

Query: 301 NAPTSDAFSAYSFDGWLVFADAASRAMKKAEPGTPEFRVALRDAIFSTKEVVGTHGVYTF 360
               +     +  D  ++  DA  RA      GT + +  +RDAI  TK  V T G++T+
Sbjct: 305 KPLEAGPLPGHGLDALMMAMDAFKRA------GTTD-KAKVRDAIEQTKGFVATTGIFTY 357

Query: 361 KPGSLYGVDERARVIVKLDNGQWKLA 386
            P    G+   A  +V + NG W +A
Sbjct: 358 SPTDHMGLGLDAFHMVDIKNGDWVIA 383