Pairwise Alignments

Query, 542 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 548 a.a., AMP-binding domain protein from Pseudomonas putida KT2440

 Score =  150 bits (379), Expect = 1e-40
 Identities = 154/509 (30%), Positives = 217/509 (42%), Gaps = 49/509 (9%)

Query: 48  RIERLRAAYAQAGYGHGHRVGLLLENRPAFIFHWLALNALGVSVVPINAEMRSAELVYLI 107
           R   L +A  + G   G RV +L  N P  +     +   G  +V IN  +    + +++
Sbjct: 54  RSRALASALERVGVQPGERVAILAPNIPEMLEAHYGVPGAGAVLVCINIRLEGRSIAFIL 113

Query: 108 GHSEIGLAVTLQERAADLRAAAAQAGIEFETMGPDD---------------AVPPARTPA 152
            H    + +  +E  A    A A        +G DD               A      PA
Sbjct: 114 RHCAAKVLICDREFGAVANQALAMLDAPPLLVGIDDDQAERADLAHDLDYEAFLAQGDPA 173

Query: 153 PRAHEPVGTDTECGLLYTSGTTGRPKGCILSNAYFLRAGEWYAALDGVCSIRPDKERV-I 211
                P        + YTSGTTG PKG +L +      G +  A  G    +     V +
Sbjct: 174 RPLSAPQNEWQSIAINYTSGTTGDPKGVVLHHR-----GAYLNACAGALIFQLGPRSVYL 228

Query: 212 TPLPLNHMNAMAFSTMVVLVAGGCLVQLDRFHPKTWLASAKESGATIVHYLGVMPAMLLS 271
             LP+ H N  +  T  V ++GG  V L +  P    A+  E   T +    V+ +ML+ 
Sbjct: 229 WTLPMFHCNGWSH-TWAVTLSGGTHVCLRKVQPDAINAAIAEHAVTHLSAAPVVMSMLIH 287

Query: 272 AP-ASAADRDHAIRWGFGAGVDRKNHAPFEERFGFPLVEAWAMTETGAAACIMANR---- 326
           A  ASA     ++  G GA       A  E R GF +  A+ MTE+   + +   +    
Sbjct: 288 AEHASAPPVPVSVITG-GAAPPSAVIAAMEAR-GFNITHAYGMTESYGPSTLCLWQPGVD 345

Query: 327 ----EPRLVGTSCFGRQEDFVEIRLVGEDGGDAAVDAPG----ELLVRSAGSDPRRYFFS 378
               E R    S  G     +E   V +      V A G    EL+VR            
Sbjct: 346 ELPLEARAQFMSRQGVAHPLLEEATVLDTDTGRPVPADGLTLGELVVRG------NTVMK 399

Query: 379 GYLKDEEATREAWADGWFHTGDLVRRDAQGNFFFVDRKKNVIRRSGENISAVEVESVLNQ 438
           GYL + EATR A A+GW HTGDL      G     DR K++I   GENIS++E+E VL Q
Sbjct: 400 GYLHNPEATRAALANGWLHTGDLAVLHLDGYVEIKDRAKDIIISGGENISSLEIEEVLYQ 459

Query: 439 HPAVKASAVAATPDAVRGDEVLACVVMREDAGAVHPEQIAASIVQHALAQLAYYKAPGYV 498
           HP V  +AV A PD+  G+   A V +R DA A   +     +V+    +LA++KAP +V
Sbjct: 460 HPEVVEAAVVARPDSRWGETPHAFVTLRADALASGDD-----LVRWCRERLAHFKAPRHV 514

Query: 499 AFVDALPLTPSQKIQRGQLREMARALPGQ 527
           + VD LP T + KIQ+  LRE AR    Q
Sbjct: 515 SLVD-LPKTATGKIQKFVLREWARQQEAQ 542