Pairwise Alignments

Query, 627 a.a., ATP-dependent RNA helicase NGO0650 from Variovorax sp. SCN45

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  265 bits (677), Expect = 4e-75
 Identities = 197/616 (31%), Positives = 278/616 (45%), Gaps = 95/616 (15%)

Query: 57  FIKLGLAPELIAAVADMGFTQPTTVQEKVIPIAMGEQAGGAQSARFVDLMVSSQTGSGKT 116
           F  LGL+  L+ A+   G+TQPT VQ++ IP  +  +          DLMV++QTG+GKT
Sbjct: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGR----------DLMVAAQTGTGKT 52

Query: 117 AAFLLPVLHTLIKRQAEAEAEAKAEFQRLAAEAAARGEAVPKKPKRKDPTNARHFKAATP 176
             F LP+L  L                             P K +R  P          P
Sbjct: 53  GGFALPILERLFPA------------------------GHPDKSQRHGPRQ--------P 80

Query: 177 GALILCPTRELAQQVAHDAIELVRHCRGLRIANVVGGMPYQLQIARL-QNADLVVATPGR 235
             L+L PTRELA QV HD+ ++      L  A + GG+    QI  + +  D++VA PGR
Sbjct: 81  RVLVLTPTRELAAQV-HDSFKVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGR 139

Query: 236 LLDLQRSMQIKLDQVKFLVVDEADRMLDLGFADDLAEVNQLTIERQQTMMFSATFAPRIQ 295
           LLDL    ++ L  V+ LV+DEADRMLD+GF  D+ +V      ++Q ++FSATF+  I 
Sbjct: 140 LLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDIT 199

Query: 296 QLATRVMREPQRVTIDSPQEKHANIKQVLFWADNAQHKRKLLDHWLRDTSINQAIVFAST 355
            LA +++  P+R+ +  P      I+Q ++    A HKR LL H +   +  Q +VF  T
Sbjct: 200 DLADKLLHNPERIEVTPPNTTVERIEQRVYRLP-ASHKRALLAHLITLGAWEQVLVFTRT 258

Query: 356 QVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTI 415
           +   + LA  L++ G +A A+HG  SQ  R + L   +   V++LVATD+AARG+D+  +
Sbjct: 259 KHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQL 318

Query: 416 THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIMDIEHYSRQQFKAEVVP 475
            HV NF LP   EDY HRIGRTGRAGR G AI+     + + +  IE  ++Q+     + 
Sbjct: 319 PHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERVTKQRIADGDLM 378

Query: 476 GMEPQQ---RMPQSRPQGDFGGRGRDNHSRDRKFGGGGGGHRGGNGGGFGGGNSNYAGAS 532
           G +  Q     P++R +    GRG  N     + G    G R   G   G      A   
Sbjct: 379 GFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTNGGRKDKGKDKGKARQQAAAKP 438

Query: 533 GFNDRGSRAPGPR---------------------------------TGGFGGQ------N 553
              ++      PR                                    FG +       
Sbjct: 439 DDKEKSGDKQQPRKPRDKKSRPQQASNNSVPKPPADRDPEEFLDDELDNFGNRADYVSPY 498

Query: 554 AGFGGGRDEGNGGGGYGRKPGWGDSAPRGGNGGGRGDFAPREGFA----PRGNGAG---- 605
            G   GR+   GG G G+  G G  +  GG G  R    PR G      PR N  G    
Sbjct: 499 QGKNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQARNGGQPRSGGGEKRPPRANNGGGARR 558

Query: 606 HGGPGKVFVPRDAQKR 621
            GG G+    RD   R
Sbjct: 559 DGGGGRGRPARDDAAR 574