Pairwise Alignments

Query, 430 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 407 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score =  362 bits (929), Expect = e-104
 Identities = 206/413 (49%), Positives = 269/413 (65%), Gaps = 21/413 (5%)

Query: 14  TVEAVWRMESAKIIATVARMVRDVGLAEELAQDALVSALEQWPDAGVPDNPAAWLTAVAK 73
           +VEA++R ES +++AT+ R++ D  LAEE   +A   A+++WP  GVPDNP AWL +  +
Sbjct: 4   SVEAIYRSESRRVLATLIRLLGDFDLAEEALHEAFFVAVQRWPLDGVPDNPRAWLVSTGR 63

Query: 74  RRALDRLRHLQLAEHKAGEIGRELDARHEMAQADFADAVDAA--LDDDIGDDLLRLVFTA 131
            +A+DRLR                +AR      + ADA++AA   D D+ DD LRL+FT 
Sbjct: 64  FKAIDRLRR---------------EARFTPLLQEQADALEAADWSDQDVEDDRLRLIFTC 108

Query: 132 CHPVLSTEARVALTLRVMGGLTTDEIARAFLVPEATVAQRIVRAKRTLAEARVPFEVPRR 191
           CHP L+ +A+ ALTLR +  LTT+EIARAFL   AT+AQRIVRAK  + EA++P++VP  
Sbjct: 109 CHPALAADAQAALTLREICDLTTEEIARAFLATPATIAQRIVRAKGKIREAKIPYQVPSL 168

Query: 192 HELEARLASVLEVIYLVFNEGYSATAGDDWMRPALCDEALRLGRIVAELVPKEAEVHGLV 251
            EL  RL SVL VIYLVFNEGYSA+ G D  R AL  EA+RLGR++ EL+P E EV GL+
Sbjct: 169 DELPGRLDSVLRVIYLVFNEGYSASMGADLTREALTREAIRLGRLLLELLP-EPEVMGLL 227

Query: 252 ALMEIQASRTAARVGASGEPVLLLEQNRARWDQLLIRRGLAALARAESLG-GALGPYALQ 310
           ALM +  SR  AR  A+GE VLL EQ+R+ WD  LI  G A + +A  LG    GPY LQ
Sbjct: 228 ALMLLHESRRPARTSANGELVLLDEQDRSLWDAALIAEGCALVEQA--LGTRRFGPYGLQ 285

Query: 311 AAIAACHGRARTADETDWARIAALYDALAGLAPSPIVELNRAVALSMAFGPAAGLEVVDS 370
           AAIAA H  A  ADETDW +I  LYD L   APSP++ELNRAVAL+M  GP AGL+ V+ 
Sbjct: 286 AAIAAVHAEASRADETDWPQIVGLYDVLLRAAPSPVIELNRAVALAMRDGPLAGLQQVEG 345

Query: 371 LTDEPALKGYHLLPTVRGDLLFKLGRRDEARKEFDRAASLTRNTRERALLLAR 423
           +     L  YH + + RG+   +LGR +EAR  +++A SLT+   E+  L  R
Sbjct: 346 ILARGELLDYHWVHSARGEFCRQLGRVEEARAAYEKALSLTQQAPEKRFLEQR 398