Pairwise Alignments

Query, 370 a.a., LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) from Variovorax sp. SCN45

Subject, 364 a.a., Ribosomal large subunit pseudouridine synthase C from Xanthobacter sp. DMC5

 Score =  151 bits (381), Expect = 3e-41
 Identities = 118/373 (31%), Positives = 169/373 (45%), Gaps = 61/373 (16%)

Query: 36  AIKFLTVDAESAGQRLDNFLFRHLKGVPKTHVYRIIRSGEVRINKGRVQAETRIEAGDVL 95
           A+   TV  + AG RLD +   H   +   H+ +++R+G+VR++ GRV+  +R+E G  +
Sbjct: 2   AVVTRTVAEDEAGMRLDRWFKVHYPDLSFGHLQKLVRTGQVRVDGGRVKTSSRVEPGQSV 61

Query: 96  RLPPIRI------------------------SARAEDGATPPAPAR-------------- 117
           R+PP+ +                         A  E GA PPA  R              
Sbjct: 62  RIPPLGLEEPEAAAAPAKGARSGEAGKDGARGASTEPGANPPAKPRASKDPAVRKLEEDR 121

Query: 118 ---EFPVLLEDDAVLAIDKPAGVAVHGGSGV---SFGVIEQLRTARPGAKFLELVHRLDR 171
              +   L ED  V+ ++KP G+AV GGSG      G++E L+  R G K   LVHR+D+
Sbjct: 122 AFIKSITLFEDKDVMVLNKPFGLAVQGGSGTYRHVDGLLEALKD-RDGQK-PRLVHRIDK 179

Query: 172 ETSGILLVAKKRSALVALQDQFRERETGKTYLALVEGAWPANKKVLDAPLAKYLLPDGSG 231
           +TSG LL+AK R A   L   FR RE  K Y A+V G      K     ++ YL  D   
Sbjct: 180 DTSGCLLIAKSRLAASVLAKSFRSREARKVYWAVVPGV----PKPRQGRISTYLARD--- 232

Query: 232 AGAGERRVRVVAKDHPDAMRAVTLVRVLARLTLPGDATPMSLLAVTIKTGRTHQIRVHLA 291
               E ++RV      +A  A+T   V+ +      A  MS L++   TGRTHQ+R HLA
Sbjct: 233 --EDEEKMRVARHGEDEASHAITYYAVVDQA-----AQKMSWLSLKPVTGRTHQLRAHLA 285

Query: 292 SAGHPIAGDDKYGESDRQRALQKIGLKRMFLHAWRLQFNHPASGERVALQAGLPPELNTL 351
              HPI GD KY + +       +   R+ L A RL   HP     + + A LP  +   
Sbjct: 286 HIHHPILGDPKYFDIENWELPGGL-QNRLHLLARRLVIPHPRGNGVIDVSAPLPQHMAQT 344

Query: 352 MPPTALEAMAQHP 364
                 +A    P
Sbjct: 345 FAVLGFDASQYDP 357