Pairwise Alignments

Query, 370 a.a., LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) from Variovorax sp. SCN45

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

 Score =  118 bits (295), Expect = 3e-31
 Identities = 96/327 (29%), Positives = 156/327 (47%), Gaps = 45/327 (13%)

Query: 42  VDAESAGQRLDNFLFRHLKGVPKTHVYRIIRSGEVRINKGRVQAETRIEAGDVLRLPPIR 101
           V +E  GQRLD    +      ++ +   I+ G + ++   ++    +  G +L L    
Sbjct: 11  VPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVIRPRDIVHGGAILEL---- 66

Query: 102 ISARAEDGATPPAPAREFPVLLEDDAVLAIDKPAGVAVHGGSGVSFGVI---------EQ 152
            +A  E      A   E  ++ EDD +L I+KPAG+ VH  +G + G +         + 
Sbjct: 67  -TAEQEAQGEWVAQDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDI 125

Query: 153 LRTARPGAKFLELVHRLDRETSGILLVAKKRSALVALQDQFRERETGKTYLALVEGAWPA 212
           +   R G     +VHRLD++T+G+++VAK   A   L  Q + R   + Y  +V G   A
Sbjct: 126 INVPRCG-----IVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVA 180

Query: 213 NKKVLDAPLAKYLLPDGSGAGAGERRVRVVAKDHPDAMRAVTLVRVLARLTLPGDATPMS 272
             K+ +AP+ ++          G++R R+   +     +AV+  RVL R          +
Sbjct: 181 GGKI-NAPIGRH----------GQQRQRMAVME--GGKQAVSHYRVLERFR------SHT 221

Query: 273 LLAVTIKTGRTHQIRVHLASAGHPIAGDDKYGESDR----QRALQKIGLK---RMFLHAW 325
            + V ++TGRTHQIRVH+A    P+ GD  YG   R      A     LK   R  LHA 
Sbjct: 222 HVRVKLETGRTHQIRVHMAHINFPLVGDPAYGGRFRIPPAASATMVDSLKNFPRQALHAR 281

Query: 326 RLQFNHPASGERVALQAGLPPELNTLM 352
            L+ +HP SG+R++ ++ LP +L  L+
Sbjct: 282 FLELDHPTSGKRMSWESPLPDDLVWLL 308