Pairwise Alignments

Query, 1068 a.a., Ribonuclease E (EC 3.1.26.12) from Variovorax sp. SCN45

Subject, 908 a.a., Ribonuclease E (EC 3.1.26.12) from Sphingobium sp. HT1-2

 Score =  379 bits (972), Expect = e-109
 Identities = 271/814 (33%), Positives = 399/814 (49%), Gaps = 88/814 (10%)

Query: 88  RIQDAIREGQELTVQVEKEERGNKGAALTTFISLAGRYVVLMPNNPRGGGVSRRIEGD-D 146
           +IQD I+  Q L VQV KEERGNKGAALTT++SLAGRY VLMPN   GGG+SR+I    D
Sbjct: 176 KIQDVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAAD 235

Query: 147 RAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLWSAIDGAAKGGKGAFLI 206
           R  LK  + ++  P  M  I RTAG+ R+ PE++ D +YL +LW  I           LI
Sbjct: 236 RKRLKSIIAEMALPSSMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLRAAAPELI 295

Query: 207 YQESSLVIRAIRDYFNHDIGDILIDTDDIYDQAQQFMAHVMPEHAARVKRYRDDAALFSR 266
           + +S L+ RAIRD +N DI +++++ +  Y  A+ FM  +MP HA RVK+Y D  +LF R
Sbjct: 296 HNDSDLIKRAIRDIYNKDIEEVIVEGEHGYKAAKDFMKLLMPSHARRVKQYADAVSLFQR 355

Query: 267 FQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAIKGGDIEETATRTNLEAAD 326
             +E Q+ + Y   VQL SGG +VI+ TEALVS+D+NS R+ +   IE+TA  TNLEAA 
Sbjct: 356 ASVEDQLAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAR 415

Query: 327 EVARQMRLRDLGGLIVIDFIDMDESKNRREVESRLRDALRQDRARVQFGSISKFGLMEMS 386
           E+ARQ+RLRD+ GL+VIDFIDM+ + N R+VE  +++AL+ DRAR+Q G IS FGLMEMS
Sbjct: 416 EIARQLRLRDMAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMS 475

Query: 387 RQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQILRIIQEESMKDNTAAVHVQVPVEVA 446
           RQRL+  + E S+  CP C G+G +R   S+ L  LR+++EE+ +   + + ++   E A
Sbjct: 476 RQRLRTGVLEASTRQCPHCEGTGLVRTASSAGLGALRMLEEEAARGRGSVITLRASQEAA 535

Query: 447 SFLLNEKRPEIAKIELKQRVTVLMVPNKTLETPNYKLERLKHDDPRLDHIEASYKMADEI 506
            ++LN KR E+ +IE +  V ++++P+  +E     +E      PR + +     +A+E 
Sbjct: 536 FYVLNNKRRELDEIEQRYGVRIVVLPDGEIEGARMSVE---PSGPRPERVVTYAPLAEEE 592

Query: 507 EDPTSVTRRSQEPTNKQTPV----IKGVLPDAPAPVVPPKPEAVRAPAAAAPAPVAPPVV 562
           +D   +    +E   ++        +G   D        +    R          A    
Sbjct: 593 DDLDVIEDEEEEEEIEEEAAPERQERGERGDRGEEREGGRRRRRRRRRRGGQRDDA---- 648

Query: 563 TAPVPAQTGFFSWIKNLFGGTPAPAPAPAPAAIPVEPPKPRRDGRPGRDGEARGGSRDGE 622
               P +TG  +  ++   G  +        A+  E         P  +GE  GGSR   
Sbjct: 649 ----PGETGEDNGAEDGEEGEESAEIETDAEAVAAE---------PAAEGEDEGGSR-RR 694

Query: 623 QRRGGRGGEGRGEGRNAEGRGEGGGRSGGRDGERRGGRGGERREGREGREGRNSSELRAD 682
            RRG RGG  R E          GG +G   GE  G    E     E       + + A+
Sbjct: 695 GRRGRRGGRRRRE----------GGEAGAEAGETAGDDSAETVIEAEAAAPVEEAPV-AE 743

Query: 683 GAPQQPREQREPREQREPREPREARAPRDGEQRRNGRGERREGEGRDGRNAPAEALDGNL 742
            AP++   +  P+ +R PR                          R  ++A AE     +
Sbjct: 744 AAPEEAPAEEAPKTRRRPR-------------------------ARKAKDAAAEPAAVEV 778

Query: 743 NLEAQQLASGEEGNAGERAPRARGERRERGERNERGERGERNSD-RAERNGDAQQPRGET 801
                ++ +         AP A     E  E+ +     ++ +D  AE    A+ P  E 
Sbjct: 779 TEALAEVVA--------EAPAAEPVVEEAAEKPKPKRTRKKKADVEAEAAAAAEAPAVE- 829

Query: 802 ALAGEDAAAQGERQPRNGRDEQRAPRGERGGERGERNDGRRERRNDAPQ-AEADGRGAEA 860
            +  E+AA   + +P+  R ++  P  E                  AP   E     AEA
Sbjct: 830 -VVAEEAAE--KPKPKRTRKKKVEPVAEEVAVEA------------APAVTEVAAAPAEA 874

Query: 861 AAADVEQTNDAGNEQAPRREGDERRGRSRDRYGR 894
           A A    T D   E      G+ RRG  +  +G+
Sbjct: 875 APASEAVTADPAAEVESDENGEPRRGWWQRTFGQ 908



 Score = 88.6 bits (218), Expect = 2e-21
 Identities = 89/300 (29%), Positives = 127/300 (42%), Gaps = 28/300 (9%)

Query: 686 QQPREQREPREQREP-REPREARAPRDGEQRRNGRGERREGEGRDGR--NAPAE------ 736
           +   E+ E  E+  P R+ R  R  R GE+R  GR  RR    R G+  +AP E      
Sbjct: 599 EDEEEEEEIEEEAAPERQERGERGDR-GEEREGGRRRRRRRRRRGGQRDDAPGETGEDNG 657

Query: 737 ALDGNLNLEAQQLASGEEGNAGERAPRARGERRERGERNERGERGERNSDRAERNGDAQQ 796
           A DG    E+ ++ +  E  A E  P A GE  + G    RG RG R   R    G+A  
Sbjct: 658 AEDGEEGEESAEIETDAEAVAAE--PAAEGE--DEGGSRRRGRRGRRGGRRRREGGEAGA 713

Query: 797 PRGETALAGEDAAAQGERQPRNGRDEQRAPRGERGGERGERNDGRRERRNDAPQA-EADG 855
             GET  AG+D +A+   +       + AP  E   E     +  + RR   P+A +A  
Sbjct: 714 EAGET--AGDD-SAETVIEAEAAAPVEEAPVAEAAPEEAPAEEAPKTRRR--PRARKAKD 768

Query: 856 RGAEAAAADVEQTNDAGNEQAPRREGDERRGRSRDRYGRDRRERGPRDENEAGAQAAEVA 915
             AE AA +V +       +AP  E        + +  R R+++   +   A A  A   
Sbjct: 769 AAAEPAAVEVTEALAEVVAEAPAAEPVVEEAAEKPKPKRTRKKKADVEAEAAAAAEAPAV 828

Query: 916 EVAVAEAATTTADVQEEAPAPRHQPQQQLPLASEQQAVVAEAVVAAPVAAAPVAAPAPVA 975
           EV   EAA        E P P+   ++++   +E+ AV A   V    AA   AAPA  A
Sbjct: 829 EVVAEEAA--------EKPKPKRTRKKKVEPVAEEVAVEAAPAVTEVAAAPAEAAPASEA 880



 Score = 87.4 bits (215), Expect = 4e-21
 Identities = 42/76 (55%), Positives = 54/76 (71%)

Query: 3  RMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGE 62
          RMLI+A   EE R+A+V G ++ +++ E    +Q KGNIY A VTRVEPSL+A FVDYG 
Sbjct: 4  RMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVDYGG 63

Query: 63 DRHGFLPFKEISKQYF 78
          +RHGFL F EI   Y+
Sbjct: 64 NRHGFLAFSEIHPDYY 79