Pairwise Alignments
Query, 1068 a.a., Ribonuclease E (EC 3.1.26.12) from Variovorax sp. SCN45
Subject, 1091 a.a., ribonuclease E from Pseudomonas putida KT2440
Score = 780 bits (2014), Expect = 0.0
Identities = 487/1083 (44%), Positives = 633/1083 (58%), Gaps = 94/1083 (8%)
Query: 1 MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY 60
MKRMLINATQ EE R+A+VDGQ+L D +IE REQ+K NIYK +TR+EPSLEA FVD+
Sbjct: 1 MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF 60
Query: 61 GEDRHGFLPFKEISKQYFAEGVSASQARIQDAIREGQELTVQVEKEERGNKGAALTTFIS 120
G +RHGFLP KEIS++YF + + I++ + EGQE+ VQVEKEERGNKGAALTTFIS
Sbjct: 61 GSERHGFLPLKEISREYFKKAPEG-RVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFIS 119
Query: 121 LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ 180
LAGRY+VLMPNNPR GG+SRRIEG++R EL+EA++ L P M +I RTAG+GRS+ E+Q
Sbjct: 120 LAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQ 179
Query: 181 WDLNYLLKLWSAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIYDQAQ 240
WDL+YLL+LW+AI A+ FLIYQES+++IRAIRDY DIG++LID+ D ++A
Sbjct: 180 WDLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEAL 239
Query: 241 QFMAHVMPEHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV 300
F+ VMP++A++VK Y D LF+RFQIE QIE+A+ R V LPSGG+IVID TEALVS+
Sbjct: 240 TFIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSI 299
Query: 301 DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRREVESR 360
D+NSARA KG DIEETA +TNLEAA+E+ARQ+RLRD+GGLIVIDFIDM +KN+R VE R
Sbjct: 300 DINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEER 359
Query: 361 LRDALRQDRARVQFGSISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQ 420
+R+ L DRARVQ G IS+FGL+EMSRQRL+P+L E S I CPRC G+G IRD ES +L
Sbjct: 360 VRECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLA 419
Query: 421 ILRIIQEESMKDNTAAVHVQVPVEVASFLLNEKRPEIAKIELKQRVTVLMVPNKTLETPN 480
ILR+I+EE++KD TA V QVP+ VA+FLLNEKR I KIEL+ R ++++PN LETP+
Sbjct: 420 ILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPH 479
Query: 481 YKLERLKHDDPRLDHIEASYKMADEIEDPTSVTRRSQEPTNKQTPV-IKGVLPDAPAPVV 539
++++RL+ D+P + + ++SY++A + + +PT +T V + + APA
Sbjct: 480 FEVQRLRDDNPEVLNNQSSYEIA------AAEAEEAPQPTATRTLVRQEAAVKTAPARAN 533
Query: 540 PPKPEAVRAPAAAAPAPVAPPVVTAPVPAQ-TGFFSWIKNLFGGTPAPAPAP-APAAIPV 597
P P A P AAAP AP +AP P+ G + +LF G PA AP APAA
Sbjct: 534 APVPAAAEEPQAAAPVAPAP---SAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAA--- 587
Query: 598 EPPKPRRDGRPGRDGEARGGSRDGEQRRGGRGGEGRGEGRNAEGRGEGGGRSGGRDGERR 657
E P R R E+RR GR + RN R+G RD ER
Sbjct: 588 EKPAAERSPR-------------NEERR-----NGRQQSRN---------RNGRRDEER- 619
Query: 658 GGRGGERREGREGREGRNSSELRADGAPQQPREQREPREQREPREPREARAPRDGEQRRN 717
+ E R R RE R E RA + PRE+R PRE+R PRE R R PR E RR
Sbjct: 620 --KPREERAERAPREERAPREERAPREERAPREERAPREERAPREERAPRQPR--EDRRG 675
Query: 718 GRGERREGEGRDGRNAPAEALDGNLNLEAQQLASGEEGNAGERAPR-ARGERRERGERNE 776
RGE R E R+ +A A +++A E ERAPR R R ER R E
Sbjct: 676 NRGEERVRELREPLDATPPAEREERQPREERVAREERAPREERAPREERAPREERAPREE 735
Query: 777 RGERGERNSDRAERNGDAQQPRGETALAGEDAAAQGERQPRNGRDEQRAPRGERGGERG- 835
R R ER + + PR E A E+ A + ER PR R+E++ E E+
Sbjct: 736 RAPREERAPREERAPREERAPREERA-PREERAPREERAPRPPREERQPRAAEEATEQAA 794
Query: 836 -----------------ERNDGRRERRNDAPQAEADGRGAEAAAAD---VEQTNDAGNEQ 875
E DG R RR Q R A+ ++ + + G+E+
Sbjct: 795 ELAEEQLPGEELLQDEQEGTDGERPRRRSRGQRRRSNRRERQRNANGELIDGSEEEGSEE 854
Query: 876 APRR-EGDERRGRSRDRYGRDRRERGPRDENEAGAQAAEVAEVAVAEAATTTADVQEEAP 934
P++ + E ++A AQA + AE A AE A EA
Sbjct: 855 QPQQHQATELGAELAAGLAVTAAVASSNISSDAEAQANQQAERATAEVAAVAETDNSEAA 914
Query: 935 APRHQPQ-----QQLPLASEQQAVVAEAVVAAPVAAAPVAAPAPVANGRALPKVQPF--- 986
P Q + Q+ +A + V E V AA A PV AP P V+P
Sbjct: 915 QPVEQVEAATKAQEASVAPAVEQPVTEPVAAAEATAEPVVEVAPQPVAEDAPAVEPVVVA 974
Query: 987 ---------ELPLDELAQIAQNSGLQWVNSDAER---IAQARAAIAAEPKPVHVPRERPP 1034
E P+ E +I Q + V A + + +A+ + AEP P V E P
Sbjct: 975 ETAVTETPAEAPVVEAGEIEQAPAVVEVAPVAAQPAPVVEAQPEVVAEPAPAVV--EPAP 1032
Query: 1035 LVV 1037
VV
Sbjct: 1033 AVV 1035