Pairwise Alignments

Query, 1068 a.a., Ribonuclease E (EC 3.1.26.12) from Variovorax sp. SCN45

Subject, 489 a.a., bundles of cytoplasmic filaments (VIMSS) from Escherichia coli BW25113

 Score =  267 bits (682), Expect = 2e-75
 Identities = 163/466 (34%), Positives = 259/466 (55%), Gaps = 12/466 (2%)

Query: 4   MLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGED 63
           +L+N T +E R +A +DG  L +  IE E R    GNIYK  V+RV P ++A FVD G D
Sbjct: 5   LLVNVTPSETR-VAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63

Query: 64  RHGFLPFKEISKQYFAEGVSASQAR------IQDAIREGQELTVQVEKEERGNKGAALTT 117
           +  FL   +I      E V+  + +      I + +R+GQ+L VQV K+  G KGA LTT
Sbjct: 64  KAAFLHASDIMPH--TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121

Query: 118 FISLAGRYVVLMPNNPRGGGVSRRIEGD-DRAELKEAMDQLEYPKGMSIIARTAGIGRSA 176
            I+L  RY+V MP     G VS+RIE + +R  LK+ + +    +G  II RTA  G   
Sbjct: 122 DITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQGGFII-RTAAEGVGE 179

Query: 177 PELQWDLNYLLKLWSAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIY 236
            EL  D  YL ++W+ +    K  +  + +Y E +L  R +RD+ + ++  I +D+   Y
Sbjct: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239

Query: 237 DQAQQFMAHVMPEHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEA 296
           +   +F +  +PE  ++++ Y     +F  F +E++I+ A  R V+L SGG ++ID TEA
Sbjct: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299

Query: 297 LVSVDVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRRE 356
           + +VD+N+   +   ++++T   TN+EA   +ARQ+RLR+LGG+I+IDFIDM+   +RR 
Sbjct: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359

Query: 357 VESRLRDALRQDRARVQFGSISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTES 416
           V   L  AL +DR +      S  GL+EM+R+R + ++       CP C G G ++  E+
Sbjct: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419

Query: 417 SALQILRIIQEESMKDNTAAVHVQVPVEVASFLLNEKRPEIAKIEL 462
              +I+R I       ++    V     VA  L  E+   +A++E+
Sbjct: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEI 465