Pairwise Alignments

Query, 414 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score =  245 bits (626), Expect = 1e-69
 Identities = 158/394 (40%), Positives = 219/394 (55%), Gaps = 31/394 (7%)

Query: 15  AMAIAALAACSRTSVETSGTSKAAAAPGKEVGTVTLKHETLAQSTELPGRTAAPVIAEIR 74
           AMAIA LA C     E +     AA     V  VTL  E +A + ELPGR     +AE+R
Sbjct: 14  AMAIA-LAGC-----EPAAEQDGAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEVR 67

Query: 75  PQVGGILKERLFTEGSQVKAGQVLYQLDPAPLQAAHASAQASVRKAESALATARTVARRN 134
            +V GI+  + F EG+ VKAG VL+Q+DPAP +AA A A+A + +A++    A+   +R 
Sbjct: 68  ARVPGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKRY 127

Query: 135 AELVKIDAISRQVFDESQAAEQQAEADLGVARAAEQTARIQLGYTRITSPIAGWAELSTV 194
             LVKI+A+S+Q FD + A  + A A +  A+A  Q AR+ LGY  +T+PI+G    +  
Sbjct: 128 EPLVKIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRALA 187

Query: 195 TPGALVTANQAAALTTVQQLDPIHVHVTQSSRELLRLKRELASGRLQRASDAEARIQLVL 254
           T GALV   +A  +  +QQLDPI++  TQS+ + LRL++ L  G L     A+++     
Sbjct: 188 TEGALVGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGAL----SADSQRLTAQ 243

Query: 255 EDGSKYPHAGRLTFSGVTVDAGTGSVTLRAVVPNPDKLLMPGMYVRAVLQEGTDATALLV 314
            +G+ +  +G L F+ V+VD GTG V LR    N D  L+PGMYVR    +GTD  A+LV
Sbjct: 244 VEGTDFQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAILV 303

Query: 315 PQQAVTRAPDGSASALVVDAENKVAK-RPIQVGRAVGTRWQVLEGLAAGDRVMTEGSQRV 373
           PQ+AV R  DG A  LV  A N +A+ R ++ G   G+RWQ+ EGL  GD+V+       
Sbjct: 304 PQRAVQRGSDGQARVLV--ATNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIV------ 355

Query: 374 KVGEKVKVVDLGAKAANGTPSGPVASAQPDAADA 407
                          A   P  PVA AQ   A A
Sbjct: 356 ------------GSPAGLAPGMPVAPAQKQTAAA 377