Pairwise Alignments

Query, 414 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 385 a.a., multidrug resistance efflux transporter (NCBI) from Escherichia coli BW25113

 Score =  311 bits (798), Expect = 2e-89
 Identities = 178/385 (46%), Positives = 242/385 (62%), Gaps = 7/385 (1%)

Query: 6   RSRFALLFTAMAIAALAACSRTSVETSGTSKAAAAPGKEVGTVTLKHETLAQSTELPGRT 65
           R R  L+      A L AC   S E       AAA   EVG VTL   ++   +ELPGRT
Sbjct: 3   RRRKLLIPLLFCGAMLTACDDKSAEN------AAAMTPEVGVVTLSPGSVNVLSELPGRT 56

Query: 66  AAPVIAEIRPQVGGILKERLFTEGSQVKAGQVLYQLDPAPLQAAHASAQASVRKAESALA 125
               +AEIRPQVGGI+ +R F EG +V  G  LYQ+DPAPLQA   SA+ S+ KA S  +
Sbjct: 57  VPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTAS 116

Query: 126 TARTVARRNAELVKIDAISRQVFDESQAAEQQAEADLGVARAAEQTARIQLGYTRITSPI 185
            AR    R A L+K + +SRQ +D ++    +AEA++ VA+AA + A I L Y  +TSPI
Sbjct: 117 NARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPI 176

Query: 186 AGWAELSTVTPGALVTANQAAALTTVQQLDPIHVHVTQSSRELLRLKRELASGRLQRASD 245
            G +  S+VT GALVTANQA +L TVQ+LDPI+V +TQS ++ LR+K E+ASG++++   
Sbjct: 177 TGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQV-Q 235

Query: 246 AEARIQLVLEDGSKYPHAGRLTFSGVTVDAGTGSVTLRAVVPNPDKLLMPGMYVRAVLQE 305
               +QL LE+G +Y   G L FS  TVD  TGSVTLRA+ PNP+  L+PGMYV A++ E
Sbjct: 236 GSTPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDE 295

Query: 306 GTDATALLVPQQAVTRAPDGSASALVVDAENKVAKRPIQVGRAVGTRWQVLEGLAAGDRV 365
           G+    LLVPQ+ VT    G A+AL++D ++ V  R I+  +A+G +W V  GL AGDRV
Sbjct: 296 GSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRV 355

Query: 366 MTEGSQRVKVGEKVKVVDLGAKAAN 390
           +  G QR++ G K + +    + A+
Sbjct: 356 IVSGLQRIRPGIKARAISSSQENAS 380