Pairwise Alignments

Query, 418 a.a., ABC transporter, substrate-binding protein RSc1750 from Variovorax sp. SCN45

Subject, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score = 63.2 bits (152), Expect = 1e-14
 Identities = 94/373 (25%), Positives = 155/373 (41%), Gaps = 29/373 (7%)

Query: 5   RAPLARIALASLLCISGAAQAQQQTYKIAYIDPLSGPFANVGELMLMHTQYAIEDINAKG 64
           +A LA  AL SL   +  A A Q       +  +SG FA+ G+   M ++ AI    A+ 
Sbjct: 8   KAGLALGALGSLPLGAHRAFADQPLTFYG-LKSMSGAFASYGKYADMGSRLAI----AEH 62

Query: 65  GVLGGTKLQLLQFDSKLSAQESQSALQAAIDQGAKAIVTGGSGSSVVTALVQSVARWNQR 124
             L G  L+    D++ +A ++   +Q AI Q       G + SS   A+ + + +    
Sbjct: 63  PQLLGHPLKYKVIDTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEIHKAGG- 121

Query: 125 NPGKELIVLNHSSIDPEMTGKACSFWHFQTEANTAMKMK-ALANYIKKTPDVKKVYLLNQ 183
                 + +     D E+TGK C+   F+    T   ++  L    ++ P  K+ Y +  
Sbjct: 122 ------VFMTPVGAD-EITGKDCNASTFRWSVPTYGAIRETLVPMSRQLPQAKRWYTITP 174

Query: 184 DYAHGKQWASYGRQMVGLARPDIQFVGETLHPIGRVKDFAPYVANIKQSGADSVITGNWG 243
            Y  G       R++   A   ++ +G + H + + ++F+ Y+ N   +  D ++  N+G
Sbjct: 175 QYVFGDALLDNARKV--FAELGVEHIGNSYHSL-QEQEFSGYLTNAIAAKPDVLVLLNFG 231

Query: 244 QDMTLLLKAAGDAGYNLRY---FNHSAGSVPGTVTAVSQAKLGQLTWVAEWHPGEADTPK 300
              +  L+ A + G   R       SAG +       S    G       WH  + DTP 
Sbjct: 232 SQASNALRQAVNFGIKDRMKVLMVWSAG-LDQFQELGSDVLEGVYLGAQYWH--QVDTPL 288

Query: 301 ----VDALAKAYKAKTGKDFLAPRIDMTPRLLAAAINKAGSTDTVKVAHALEDLIFDSVV 356
               V A  KAY         A  I    +++  AI KAGS D   V+ AL+ + F    
Sbjct: 289 NKLLVAATRKAYGINPNYPLAADYIGT--KVMLEAIVKAGSLDGAAVSAALQGMRFQGPT 346

Query: 357 GPVRMRGEDHQLL 369
           G   +R  DHQ+L
Sbjct: 347 GEELIRPGDHQVL 359